MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.4 nTPM
HPA Brain:91.9 nTPM
GTEx:6.4 nTPM
FANTOM5:88.2 Scaled Tags Per Million
Pig:37.0 nTPM
Mouse:10.2 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 91.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.0
1833 Male, age 53, unknown 101.7
2666 Male, age 74, left hemisphere 99.3
2219 Male, age 76, both hemispheres 95.8
2828 Female, age 72, unknown 92.4
2411 Female, age 72, unknown 89.6
2586 Male, age 75, left hemisphere 88.1
1827 Male, age 72, unknown 87.4
1830 Male, age 51, unknown 86.7
1870 Female, age 42, unknown 85.4
2019 Male, age 18, unknown 84.0
Dorsal raphe nucleus
nTPM: 82.1
2016 Female, age 72, unknown 95.0
2750 Male, age 76, both hemispheres 86.0
2047 Male, age 72, unknown 77.7
2298 Female, age 72, unknown 76.2
1828 Male, age 53, unknown 75.8
Inferior colliculus
nTPM: 87.9
2849 Male, age 72, unknown 99.1
1848 Female, age 42, unknown 86.5
1890 Male, age 53, unknown 83.1
2097 Female, age 72, unknown 82.9
Median raphe nucleus
nTPM: 82.4
2220 Male, age 76, midline 82.4
Periaquaductal grey, anterior
nTPM: 85.7
1947 Male, age 18, unknown 91.9
2502 Female, age 75, unknown 86.2
1795 Male, age 51, unknown 79.0
Periaquaductal grey, dorsal
nTPM: 91.9
1840 Male, age 53, unknown 99.1
1831 Male, age 72, unknown 95.0
2850 Male, age 76, both hemispheres 88.6
2464 Female, age 72, unknown 84.7
Periaquaductal grey, lateral
nTPM: 78.9
2140 Male, age 76, both hemispheres 86.1
2053 Male, age 18, unknown 84.5
2272 Male, age 74, both hemispheres 66.0
Pretectal area
nTPM: 82.7
2007 Male, age 72, unknown 90.6
2407 Male, age 75, both hemispheres 86.9
2825 Male, age 18, unknown 86.5
2224 Female, age 72, unknown 86.1
2316 Male, age 76, right hemisphere 84.6
1944 Female, age 72, unknown 83.0
1817 Female, age 42, unknown 82.5
1816 Male, age 51, unknown 80.5
2667 Female, age 75, unknown 79.6
1815 Male, age 53, unknown 78.0
2273 Male, age 74, both hemispheres 71.4
Red nucleus
nTPM: 89.5
2588 Male, age 74, left hemisphere 98.0
2503 Female, age 72, unknown 97.4
2725 Female, age 75, unknown 97.1
1865 Male, age 51, unknown 96.0
2584 Male, age 75, left hemisphere 93.8
1821 Female, age 72, unknown 88.6
2769 Male, age 72, unknown 88.4
2227 Male, age 72, unknown 86.1
1904 Male, age 53, unknown 85.5
1954 Female, age 42, unknown 85.2
2785 Male, age 18, unknown 81.6
2823 Male, age 76, right hemisphere 76.0
Substantia nigra
nTPM: 90.8
2409 Female, age 72, unknown 106.4
2665 Male, age 74, both hemispheres 99.2
1916 Female, age 42, unknown 97.3
2699 Male, age 18, unknown 93.9
1851 Male, age 51, unknown 91.3
1941 Male, age 53, unknown 88.0
2583 Male, age 75, right hemisphere 86.4
2590 Female, age 75, unknown 82.3
2241 Male, age 72, unknown 82.1
1889 Female, age 72, unknown 81.6
Superior colliculus
nTPM: 88.9
2587 Male, age 74, left hemisphere 109.7
1839 Male, age 51, unknown 93.1
2668 Female, age 75, unknown 91.9
1913 Female, age 42, unknown 90.8
1796 Male, age 53, unknown 89.1
2664 Male, age 75, both hemispheres 87.1
1995 Male, age 72, unknown 86.8
1895 Male, age 76, right hemisphere 86.2
2261 Male, age 18, unknown 82.9
2087 Female, age 72, unknown 71.0
Ventral tegmental area
nTPM: 85.9
2021 Male, age 53, unknown 90.8
1915 Female, age 42, unknown 88.9
2223 Female, age 72, unknown 87.7
1942 Male, age 51, unknown 87.3
2410 Female, age 72, unknown 80.9
2218 Male, age 76, both hemispheres 79.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.4
Samples: 139

Max nTPM: 13.3
Min nTPM: 3.6
Std nTPM: 1.6
Median nTPM: 6.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 13.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 11.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 10.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 10.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 9.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 9.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 9.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 9.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 9.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 9.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.2
FF:10158-103A5 76 years, female 88.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 37.7
Min nTPM: 32.4
Sample A Female 33.4
Sample B Female 32.4
Sample C Male 33.9
Sample D Male 37.7
Midbrain
nTPM: 37.0
Samples: 4

Max nTPM: 41.8
Min nTPM: 32.9
Sample A Female 37.0
Sample B Female 36.3
Sample C Male 41.8
Sample D Male 32.9
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 31.5
Min nTPM: 28.4
Sample B Female 28.4
Sample C Male 31.1
Sample D Male 31.5
Superior colliculi
nTPM: 33.9
Samples: 4

Max nTPM: 38.0
Min nTPM: 26.5
Sample A Female 33.4
Sample B Female 26.5
Sample C Male 37.7
Sample D Male 38.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 12.3
Min nTPM: 7.8
Sample A Male 7.8
Sample B Male 10.5
Sample C Female 12.3
Sample D Female 10.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
76003374 Antisense, RP_060608_02_D01, Mouse strain C57BL/6J (56 days, male) 0.6
73513410 Antisense, RP_051121_02_B01, Mouse strain C57BL/6J (56 days, male) 0.2

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