HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:39.1 nTPM
HPA Brain:34.3 nTPM
GTEx:39.1 nTPM
FANTOM5:39.0 Scaled Tags Per Million
Pig:31.4 nTPM
Mouse:105.1 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001880
Glial cells High
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.3
Sample id Sample description nTPM
Hippocampus
nTPM: 32.7
2621 Female, age 67, right hemisphere 39.1
1898 Male, age 80, left hemisphere 34.4
2148 Female, age 91, left hemisphere 32.8
2529 Female, age 94, left hemisphere 31.6
1855 Male, age 76, left hemisphere 30.3
1911 Female, age 85, right hemisphere 28.0
Dentate gyrus
nTPM: 32.8
1927 Female, age 91, both hemispheres 36.4
2530 Female, age 94, left hemisphere 34.1
2531 Female, age 67, both hemispheres 33.4
2010 Male, age 76, both hemispheres 31.3
2246 Female, age 85, both hemispheres 30.7
2528 Male, age 74, both hemispheres 30.7
Entorhinal gyrus
nTPM: 31.0
2764 Male, age 80, right hemisphere 36.6
2613 Female, age 94, left hemisphere 33.1
1938 Female, age 85, left hemisphere 31.8
1787 Male, age 76, left hemisphere 29.4
2117 Female, age 91, right hemisphere 28.8
2686 Male, age 75, right hemisphere 26.3
Hippocampus, CA1
nTPM: 32.9
2749 Male, age 80, left hemisphere 39.6
2045 Male, age 76, both hemispheres 33.1
1873 Female, age 85, both hemispheres 32.4
2527 Male, age 74, both hemispheres 31.1
2082 Female, age 91, right hemisphere 28.6
Hippocampus, CA2
nTPM: 30.8
1892 Male, age 76, both hemispheres 34.9
2249 Male, age 74, both hemispheres 32.3
1963 Male, age 80, left hemisphere 31.8
2437 Female, age 94, left hemisphere 30.4
1940 Female, age 85, left hemisphere 30.0
2113 Female, age 91, right hemisphere 25.2
Hippocampus, CA3
nTPM: 31.7
2620 Female, age 94, left hemisphere 36.9
2436 Male, age 74, both hemispheres 33.1
1867 Male, age 76, both hemispheres 32.8
2137 Male, age 80, left hemisphere 32.0
2861 Female, age 67, both hemispheres 28.1
1891 Female, age 85, both hemispheres 27.4
Parahippocampal cortex
nTPM: 31.5
2532 Female, age 72, left hemisphere 35.9
1933 Female, age 85, both hemispheres 35.4
1850 Male, age 80, both hemispheres 34.1
2250 Female, age 67, right hemisphere 32.5
2245 Female, age 91, both hemispheres 32.4
2622 Female, age 67, right hemisphere 30.9
2693 Female, age 94, both hemispheres 29.9
1990 Female, age 91, right hemisphere 29.0
2018 Male, age 76, both hemispheres 29.0
2692 Male, age 74, both hemispheres 26.1
Perirhinal gyrus
nTPM: 34.3
1847 Female, age 91, left hemisphere 37.3
1794 Male, age 80, right hemisphere 36.5
1841 Female, age 85, right hemisphere 35.0
2521 Female, age 94, right hemisphere 32.7
2848 Male, age 76, right hemisphere 29.8
Subiculum
nTPM: 30.6
1977 Female, age 85, both hemispheres 33.4
2619 Male, age 74, both hemispheres 33.4
2438 Female, age 94, left hemisphere 31.1
1901 Male, age 80, both hemispheres 29.4
2042 Male, age 76, both hemispheres 29.1
2729 Female, age 91, right hemisphere 27.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.1
Samples: 197

Max nTPM: 65.7
Min nTPM: 19.5
Std nTPM: 9.4
Median nTPM: 38.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 65.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 64.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 64.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 64.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 64.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 63.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 61.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 58.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 58.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 57.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 55.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 39.0
FF:10169-103B7 60 years, female 40.5
FF:10153-102I9 76 years, female 37.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.4
Pig sample Sample description nTPM
Subiculum
nTPM: 26.4
Samples: 4

Max nTPM: 33.4
Min nTPM: 22.6
Sample A Female 33.4
Sample B Female 24.3
Sample C Male 25.3
Sample D Male 22.6
Dorsal hippocampus
nTPM: 31.4
Samples: 4

Max nTPM: 41.3
Min nTPM: 24.3
Sample A Female 41.3
Sample B Female 28.3
Sample C Male 31.6
Sample D Male 24.3
Entorhinal cortex
nTPM: 24.9
Samples: 4

Max nTPM: 27.8
Min nTPM: 23.0
Sample A Female 27.8
Sample B Female 24.9
Sample C Male 23.8
Sample D Male 23.0
Ventral hippocampus
nTPM: 29.2
Samples: 4

Max nTPM: 34.3
Min nTPM: 20.3
Sample A Female 30.3
Sample B Female 20.3
Sample C Male 34.3
Sample D Male 31.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 105.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 105.1
Samples: 4

Max nTPM: 111.4
Min nTPM: 96.0
Sample A Male 96.0
Sample B Male 103.6
Sample C Female 109.3
Sample D Female 111.4
Hippocampal formation
nTPM: 102.7
Samples: 4

Max nTPM: 103.7
Min nTPM: 99.9
Sample A Male 103.7
Sample B Male 103.4
Sample C Female 103.7
Sample D Female 99.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
68269676 Antisense, RP_041129_02_A07, Mouse strain C57BL/6J (56 days, male) 4.8
70919758 Antisense, RP_050713_02_A05, Mouse strain C57BL/6J (56 days, male) 0.2
1520 Antisense, RP_Baylor_103203, Mouse strain C57BL/6J (56 days, male) 0.0

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