HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.2 nTPM
HPA Brain:25.7 nTPM
GTEx:13.2 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:3.4 nTPM
Allen mouse:1.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 25.7
Sample id Sample description nTPM
Hippocampus
nTPM: 21.2
2148 Female, age 91, left hemisphere 25.2
2621 Female, age 67, right hemisphere 23.6
1855 Male, age 76, left hemisphere 20.7
1911 Female, age 85, right hemisphere 20.1
2529 Female, age 94, left hemisphere 19.1
1898 Male, age 80, left hemisphere 18.4
Dentate gyrus
nTPM: 23.0
2531 Female, age 67, both hemispheres 33.2
2530 Female, age 94, left hemisphere 22.5
1927 Female, age 91, both hemispheres 22.4
2528 Male, age 74, both hemispheres 20.6
2010 Male, age 76, both hemispheres 20.2
2246 Female, age 85, both hemispheres 19.1
Entorhinal gyrus
nTPM: 19.1
2764 Male, age 80, right hemisphere 20.8
2613 Female, age 94, left hemisphere 20.1
2686 Male, age 75, right hemisphere 20.1
2117 Female, age 91, right hemisphere 19.6
1787 Male, age 76, left hemisphere 18.4
1938 Female, age 85, left hemisphere 15.8
Hippocampus, CA1
nTPM: 22.2
2045 Male, age 76, both hemispheres 28.8
2082 Female, age 91, right hemisphere 23.4
1873 Female, age 85, both hemispheres 22.4
2749 Male, age 80, left hemisphere 19.0
2527 Male, age 74, both hemispheres 17.4
Hippocampus, CA2
nTPM: 20.3
2113 Female, age 91, right hemisphere 22.0
2437 Female, age 94, left hemisphere 21.9
1940 Female, age 85, left hemisphere 20.0
2249 Male, age 74, both hemispheres 20.0
1892 Male, age 76, both hemispheres 19.8
1963 Male, age 80, left hemisphere 18.2
Hippocampus, CA3
nTPM: 25.7
2620 Female, age 94, left hemisphere 41.2
2861 Female, age 67, both hemispheres 32.9
1867 Male, age 76, both hemispheres 21.5
2137 Male, age 80, left hemisphere 21.3
1891 Female, age 85, both hemispheres 19.7
2436 Male, age 74, both hemispheres 17.7
Parahippocampal cortex
nTPM: 18.6
2622 Female, age 67, right hemisphere 27.0
2018 Male, age 76, both hemispheres 23.0
2532 Female, age 72, left hemisphere 20.6
2250 Female, age 67, right hemisphere 17.8
2692 Male, age 74, both hemispheres 17.5
2245 Female, age 91, both hemispheres 17.2
2693 Female, age 94, both hemispheres 16.9
1990 Female, age 91, right hemisphere 16.0
1933 Female, age 85, both hemispheres 15.6
1850 Male, age 80, both hemispheres 14.7
Perirhinal gyrus
nTPM: 16.5
1794 Male, age 80, right hemisphere 19.2
2848 Male, age 76, right hemisphere 17.7
1841 Female, age 85, right hemisphere 15.8
1847 Female, age 91, left hemisphere 15.3
2521 Female, age 94, right hemisphere 14.3
Subiculum
nTPM: 20.3
2042 Male, age 76, both hemispheres 22.9
2729 Female, age 91, right hemisphere 21.5
2619 Male, age 74, both hemispheres 20.3
2438 Female, age 94, left hemisphere 19.9
1901 Male, age 80, both hemispheres 19.4
1977 Female, age 85, both hemispheres 17.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.2
Samples: 197

Max nTPM: 26.9
Min nTPM: 4.0
Std nTPM: 4.2
Median nTPM: 12.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 26.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 26.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 24.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 24.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 23.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 23.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 23.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 22.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 22.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 22.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 22.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.8
FF:10153-102I9 76 years, female 38.5
FF:10169-103B7 60 years, female 33.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.2
Pig sample Sample description nTPM
Subiculum
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.7
Sample A Female 4.8
Sample B Female 3.7
Sample C Male 4.3
Sample D Male 3.7
Dorsal hippocampus
nTPM: 4.4
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.9
Sample A Female 4.8
Sample B Female 4.6
Sample C Male 4.2
Sample D Male 3.9
Entorhinal cortex
nTPM: 4.0
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.2
Sample A Female 4.2
Sample B Female 3.8
Sample C Male 4.8
Sample D Male 3.2
Ventral hippocampus
nTPM: 5.2
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.0
Sample A Female 5.1
Sample B Female 4.7
Sample C Male 6.8
Sample D Male 4.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.4
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.9
Sample A Male 2.5
Sample B Male 2.5
Sample C Female 2.6
Sample D Female 1.9
Hippocampal formation
nTPM: 3.4
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.6
Sample A Male 2.6
Sample B Male 4.0
Sample C Female 3.4
Sample D Female 3.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.5
69262254 Antisense, RP_050301_02_A02, Mouse strain C57BL/6J (56 days, male) 1.5

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