BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:42.9 nTPM
HPA Brain:98.8 nTPM
GTEx:42.9 nTPM
FANTOM5:136.1 Scaled Tags Per Million
Pig:66.7 nTPM
Mouse:43.2 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001636Antibody HPA001637Antibody CAB010822
Glial cells MediumLowNot detected
Neuronal cells Not detectedLowNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 98.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 73.8
2288 Male, age 75, left hemisphere 85.1
1854 Male, age 80, left hemisphere 80.8
1857 Female, age 85, left hemisphere 80.8
2290 Female, age 72, unknown 78.0
2481 Female, age 94, left hemisphere 75.2
2846 Female, age 79, unknown 71.3
2289 Male, age 61, right hemisphere 66.8
1781 Male, age 74, unknown 52.5
Globus pallidus, externus
nTPM: 94.9
2646 Male, age 61, right hemisphere 104.9
1996 Male, age 80, right hemisphere 104.7
2567 Female, age 72, unknown 101.7
2772 Female, age 79, unknown 82.0
2395 Male, age 75, both hemispheres 81.1
Globus pallidus, internus
nTPM: 98.8
2111 Female, age 85, right hemisphere 115.0
2778 Female, age 91, both hemispheres 102.0
2566 Female, age 72, unknown 101.8
2287 Male, age 75, right hemisphere 96.4
2037 Male, age 80, right hemisphere 96.3
1818 Male, age 74, unknown 94.7
2483 Female, age 94, right hemisphere 85.4
Nucleus accumbens
nTPM: 74.5
2391 Female, age 94, left hemisphere 86.5
2698 Female, age 72, unknown 86.3
2286 Male, age 75, left hemisphere 80.5
2824 Male, age 61, right hemisphere 74.4
1806 Female, age 85, left hemisphere 72.5
2732 Male, age 80, right hemisphere 71.5
1783 Male, age 74, unknown 64.9
1856 Female, age 91, right hemisphere 59.4
Nucleus basalis of Meynert
nTPM: 85.6
2569 Male, age 61, both hemispheres 108.1
2393 Male, age 80, right hemisphere 88.3
2821 Male, age 75, both hemispheres 78.2
2484 Female, age 94, left hemisphere 67.9
Nucleus of the diagonal band
nTPM: 50.9
2029 Male, age 61, right hemisphere 53.4
1979 Male, age 74, unknown 52.1
2195 Female, age 85, both hemispheres 52.0
1812 Female, age 91, both hemispheres 49.3
2775 Male, age 80, right hemisphere 47.5
Putamen
nTPM: 79.5
2647 Male, age 75, left hemisphere 84.5
1829 Male, age 74, unknown 84.4
2482 Female, age 94, left hemisphere 81.6
2489 Female, age 72, unknown 80.9
1937 Female, age 91, right hemisphere 80.6
1838 Male, age 80, right hemisphere 78.0
2466 Female, age 79, unknown 66.8
Septal nuclei
nTPM: 58.8
2394 Male, age 61, left hemisphere 75.1
2199 Male, age 80, right hemisphere 65.2
2059 Female, age 85, both hemispheres 64.5
2629 Female, age 94, right hemisphere 59.9
2009 Female, age 91, both hemispheres 50.2
2031 Female, age 72, unknown 49.8
1960 Male, age 74, unknown 47.2
Stria terminalis, bed nucleus
nTPM: 52.3
2201 Male, age 74, unknown 57.9
1974 Female, age 91, both hemispheres 52.8
2486 Female, age 94, both hemispheres 46.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.3
Samples: 246

Max nTPM: 76.2
Min nTPM: 15.5
Std nTPM: 10.3
Median nTPM: 38.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 76.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 66.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 65.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 64.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 64.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 62.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 62.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 60.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 59.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 59.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 58.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.4
Samples: 246

Max nTPM: 70.3
Min nTPM: 15.0
Std nTPM: 9.7
Median nTPM: 30.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 70.3
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 67.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 62.9
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 62.9
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 57.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 56.6
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 56.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 54.7
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 54.6
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 54.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 53.6
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Brain - Putamen (basal ganglia)
Average nTPM: 42.9
Samples: 205

Max nTPM: 77.2
Min nTPM: 20.7
Std nTPM: 11.7
Median nTPM: 42.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 77.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 74.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 73.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 72.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 72.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 70.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 68.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 68.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 67.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 67.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 66.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 136.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 119.6
FF:10164-103B2 76 years, female 119.6
Nucleus accumbens
Scaled Tags Per Million: 114.5
FF:10037-101F1 23-56 years, mixed 114.5
Putamen
Scaled Tags Per Million: 99.3
FF:10176-103C5 60 years, female 99.3
Globus pallidus
Scaled Tags Per Million: 136.1
FF:10161-103A8 76 years, female 167.9
FF:10175-103C4 60 years, female 104.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 66.7
Pig sample Sample description nTPM
Caudate
nTPM: 50.9
Samples: 4

Max nTPM: 54.1
Min nTPM: 49.2
Sample A Female 49.2
Sample B Female 49.2
Sample C Male 54.1
Sample D Male 51.2
Putamen
nTPM: 66.7
Samples: 4

Max nTPM: 78.0
Min nTPM: 54.3
Sample A Female 78.0
Sample B Female 54.3
Sample C Male 66.7
Sample D Male 67.8
Septum
nTPM: 54.8
Samples: 4

Max nTPM: 56.6
Min nTPM: 51.6
Sample A Female 54.8
Sample B Female 51.6
Sample C Male 56.1
Sample D Male 56.6
Ventral pallidum
nTPM: 61.7
Samples: 4

Max nTPM: 70.6
Min nTPM: 51.7
Sample A Female 51.7
Sample B Female 56.3
Sample C Male 70.6
Sample D Male 68.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.2
Samples: 4

Max nTPM: 44.7
Min nTPM: 42.0
Sample A Male 42.0
Sample B Male 42.2
Sample C Female 44.7
Sample D Female 43.9
Septum
nTPM: 33.3
Samples: 4

Max nTPM: 38.3
Min nTPM: 30.3
Sample A Male 32.8
Sample B Male 31.8
Sample C Female 30.3
Sample D Female 38.3
Ventral forebrain
nTPM: 38.4
Samples: 4

Max nTPM: 41.8
Min nTPM: 34.1
Sample A Male 37.3
Sample B Male 40.5
Sample C Female 34.1
Sample D Female 41.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69981013 Antisense, RP_050512_04_E02, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.6
69981013 Antisense, RP_050512_04_E02, Mouse strain C57BL/6J (56 days, male) 0.6

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