HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:13.2 nTPM
HPA Brain:25.2 nTPM
GTEx:13.2 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:41.6 nTPM
Allen mouse:2.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody CAB017564
Glial cells Low
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 25.2
Sample id Sample description nTPM
Hippocampus
nTPM: 23.4
1855 Male, age 76, left hemisphere 32.7
2621 Female, age 67, right hemisphere 31.0
2529 Female, age 94, left hemisphere 22.1
1898 Male, age 80, left hemisphere 20.1
1911 Female, age 85, right hemisphere 18.6
2148 Female, age 91, left hemisphere 15.7
Dentate gyrus
nTPM: 21.9
2531 Female, age 67, both hemispheres 33.1
2010 Male, age 76, both hemispheres 24.5
2530 Female, age 94, left hemisphere 22.9
2528 Male, age 74, both hemispheres 19.5
2246 Female, age 85, both hemispheres 17.3
1927 Female, age 91, both hemispheres 14.2
Entorhinal gyrus
nTPM: 15.0
1787 Male, age 76, left hemisphere 18.4
2613 Female, age 94, left hemisphere 17.6
2117 Female, age 91, right hemisphere 16.6
2686 Male, age 75, right hemisphere 15.3
1938 Female, age 85, left hemisphere 12.2
2764 Male, age 80, right hemisphere 10.1
Hippocampus, CA1
nTPM: 25.2
2045 Male, age 76, both hemispheres 51.5
2082 Female, age 91, right hemisphere 29.1
2527 Male, age 74, both hemispheres 19.2
1873 Female, age 85, both hemispheres 15.8
2749 Male, age 80, left hemisphere 10.7
Hippocampus, CA2
nTPM: 19.6
2113 Female, age 91, right hemisphere 27.2
2437 Female, age 94, left hemisphere 25.3
1940 Female, age 85, left hemisphere 20.9
1963 Male, age 80, left hemisphere 15.6
1892 Male, age 76, both hemispheres 15.2
2249 Male, age 74, both hemispheres 13.5
Hippocampus, CA3
nTPM: 19.8
2861 Female, age 67, both hemispheres 38.7
1867 Male, age 76, both hemispheres 18.9
1891 Female, age 85, both hemispheres 17.7
2436 Male, age 74, both hemispheres 17.1
2137 Male, age 80, left hemisphere 14.3
2620 Female, age 94, left hemisphere 12.2
Parahippocampal cortex
nTPM: 15.3
2018 Male, age 76, both hemispheres 25.7
2693 Female, age 94, both hemispheres 17.2
2245 Female, age 91, both hemispheres 16.4
2622 Female, age 67, right hemisphere 15.8
2250 Female, age 67, right hemisphere 15.6
2532 Female, age 72, left hemisphere 14.8
2692 Male, age 74, both hemispheres 12.5
1933 Female, age 85, both hemispheres 11.9
1850 Male, age 80, both hemispheres 11.7
1990 Female, age 91, right hemisphere 11.5
Perirhinal gyrus
nTPM: 16.0
2521 Female, age 94, right hemisphere 25.1
2848 Male, age 76, right hemisphere 17.3
1841 Female, age 85, right hemisphere 14.3
1847 Female, age 91, left hemisphere 12.1
1794 Male, age 80, right hemisphere 11.0
Subiculum
nTPM: 17.5
2729 Female, age 91, right hemisphere 27.4
2438 Female, age 94, left hemisphere 23.3
2619 Male, age 74, both hemispheres 17.2
2042 Male, age 76, both hemispheres 15.2
1977 Female, age 85, both hemispheres 11.7
1901 Male, age 80, both hemispheres 10.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.2
Samples: 197

Max nTPM: 52.4
Min nTPM: 2.4
Std nTPM: 8.1
Median nTPM: 10.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 52.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 46.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 46.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 38.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 33.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 31.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 31.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 29.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 29.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 27.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 27.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.6
FF:10169-103B7 60 years, female 34.2
FF:10153-102I9 76 years, female 32.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Subiculum
nTPM: 15.6
Samples: 4

Max nTPM: 20.8
Min nTPM: 10.9
Sample A Female 16.0
Sample B Female 10.9
Sample C Male 14.7
Sample D Male 20.8
Dorsal hippocampus
nTPM: 12.8
Samples: 4

Max nTPM: 15.2
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 13.1
Sample C Male 15.2
Sample D Male 12.3
Entorhinal cortex
nTPM: 21.7
Samples: 4

Max nTPM: 26.4
Min nTPM: 17.2
Sample A Female 20.2
Sample B Female 26.4
Sample C Male 22.9
Sample D Male 17.2
Ventral hippocampus
nTPM: 13.3
Samples: 4

Max nTPM: 15.8
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 14.8
Sample C Male 15.8
Sample D Male 13.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 41.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 41.7
Samples: 4

Max nTPM: 43.4
Min nTPM: 37.8
Sample A Male 37.8
Sample B Male 43.0
Sample C Female 43.4
Sample D Female 42.4
Hippocampal formation
nTPM: 35.7
Samples: 4

Max nTPM: 37.7
Min nTPM: 32.3
Sample A Male 32.3
Sample B Male 36.8
Sample C Female 36.1
Sample D Female 37.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.1
79907936 Antisense, RP_071218_03_D02, Mouse strain C57BL/6J (56 days, male) 3.5
309 Antisense, RP_Baylor_103023, Mouse strain C57BL/6J (56 days, male) 0.7
308 Antisense, RP_Baylor_103023, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org