HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:59.6 nTPM
HPA Brain:78.0 nTPM
GTEx:59.6 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:55.3 nTPM
Mouse:13.4 nTPM
Allen mouse:21.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA074057
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 78.0
Sample id Sample description nTPM
Hippocampus
nTPM: 76.4
2529 Female, age 94, left hemisphere 88.7
2148 Female, age 91, left hemisphere 81.9
2621 Female, age 67, right hemisphere 79.9
1911 Female, age 85, right hemisphere 78.1
1898 Male, age 80, left hemisphere 65.2
1855 Male, age 76, left hemisphere 64.3
Dentate gyrus
nTPM: 75.7
2530 Female, age 94, left hemisphere 98.8
2531 Female, age 67, both hemispheres 89.4
2528 Male, age 74, both hemispheres 71.4
2010 Male, age 76, both hemispheres 66.5
1927 Female, age 91, both hemispheres 66.0
2246 Female, age 85, both hemispheres 62.1
Entorhinal gyrus
nTPM: 78.0
2686 Male, age 75, right hemisphere 98.7
2117 Female, age 91, right hemisphere 97.2
2764 Male, age 80, right hemisphere 74.4
2613 Female, age 94, left hemisphere 70.7
1787 Male, age 76, left hemisphere 68.9
1938 Female, age 85, left hemisphere 58.0
Hippocampus, CA1
nTPM: 63.3
2082 Female, age 91, right hemisphere 68.2
2527 Male, age 74, both hemispheres 66.9
1873 Female, age 85, both hemispheres 65.8
2749 Male, age 80, left hemisphere 58.4
2045 Male, age 76, both hemispheres 57.2
Hippocampus, CA2
nTPM: 68.9
1963 Male, age 80, left hemisphere 89.4
2437 Female, age 94, left hemisphere 75.0
2113 Female, age 91, right hemisphere 74.1
1940 Female, age 85, left hemisphere 64.6
1892 Male, age 76, both hemispheres 56.0
2249 Male, age 74, both hemispheres 54.1
Hippocampus, CA3
nTPM: 67.1
2861 Female, age 67, both hemispheres 101.0
1891 Female, age 85, both hemispheres 72.4
2620 Female, age 94, left hemisphere 69.5
1867 Male, age 76, both hemispheres 59.0
2137 Male, age 80, left hemisphere 56.0
2436 Male, age 74, both hemispheres 44.5
Parahippocampal cortex
nTPM: 63.3
2692 Male, age 74, both hemispheres 81.1
2622 Female, age 67, right hemisphere 76.7
2245 Female, age 91, both hemispheres 72.8
2532 Female, age 72, left hemisphere 66.0
1990 Female, age 91, right hemisphere 65.3
2018 Male, age 76, both hemispheres 60.9
1933 Female, age 85, both hemispheres 56.1
1850 Male, age 80, both hemispheres 53.5
2250 Female, age 67, right hemisphere 52.0
2693 Female, age 94, both hemispheres 48.9
Perirhinal gyrus
nTPM: 51.8
1847 Female, age 91, left hemisphere 57.7
1794 Male, age 80, right hemisphere 57.6
2848 Male, age 76, right hemisphere 54.2
2521 Female, age 94, right hemisphere 46.4
1841 Female, age 85, right hemisphere 43.0
Subiculum
nTPM: 75.9
2438 Female, age 94, left hemisphere 86.9
2729 Female, age 91, right hemisphere 83.4
2042 Male, age 76, both hemispheres 75.5
2619 Male, age 74, both hemispheres 74.3
1901 Male, age 80, both hemispheres 72.7
1977 Female, age 85, both hemispheres 62.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 59.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 59.6
Samples: 197

Max nTPM: 173.7
Min nTPM: 14.5
Std nTPM: 25.6
Median nTPM: 54.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 173.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 154.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 143.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 142.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 136.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 132.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 130.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 113.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 111.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 106.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 102.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.0
FF:10153-102I9 76 years, female 97.4
FF:10169-103B7 60 years, female 46.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 55.3
Pig sample Sample description nTPM
Subiculum
nTPM: 44.6
Samples: 4

Max nTPM: 56.1
Min nTPM: 39.9
Sample A Female 56.1
Sample B Female 41.3
Sample C Male 41.0
Sample D Male 39.9
Dorsal hippocampus
nTPM: 55.3
Samples: 4

Max nTPM: 66.5
Min nTPM: 42.9
Sample A Female 66.5
Sample B Female 50.1
Sample C Male 61.6
Sample D Male 42.9
Entorhinal cortex
nTPM: 55.1
Samples: 4

Max nTPM: 57.6
Min nTPM: 50.7
Sample A Female 55.8
Sample B Female 56.3
Sample C Male 57.6
Sample D Male 50.7
Ventral hippocampus
nTPM: 50.1
Samples: 4

Max nTPM: 58.2
Min nTPM: 36.8
Sample A Female 49.6
Sample B Female 36.8
Sample C Male 58.2
Sample D Male 55.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 13.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.4
Samples: 4

Max nTPM: 14.2
Min nTPM: 12.5
Sample A Male 14.2
Sample B Male 13.8
Sample C Female 13.1
Sample D Female 12.5
Hippocampal formation
nTPM: 12.8
Samples: 4

Max nTPM: 14.2
Min nTPM: 11.8
Sample A Male 12.2
Sample B Male 13.0
Sample C Female 14.2
Sample D Female 11.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 21.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 21.5
73584717 Antisense, RP_051121_03_H06, Mouse strain C57BL/6J (56 days, male) 21.5

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