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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
46.8
nTPM
Monaco:
71.6
nTPM
Schmiedel:
15.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
46.8
HPA sample
nTPM
gdT-cell nTPM: 46.8
Samples: 6
Max nTPM: 58.2
Min nTPM: 36.6
P10809_1007
36.6
P10809_1022
48.8
P10809_1041
58.2
P10809_1060
37.8
P10809_1077
52.5
P10809_1098
46.8
MAIT T-cell nTPM: 25.2
Samples: 6
Max nTPM: 30.7
Min nTPM: 13.9
P10809_1006
30.7
P10809_1024
13.9
P10809_1043
29.2
P10809_1062
23.5
P10809_1083
25.0
P10809_1097
29.1
Memory CD4 T-cell nTPM: 12.0
Samples: 6
Max nTPM: 19.5
Min nTPM: 6.9
P10809_1014
8.9
P10809_1026
6.9
P10809_1045
8.0
P10809_1064
18.2
P10809_1086
19.5
P10809_1113
10.6
Memory CD8 T-cell nTPM: 31.2
Samples: 5
Max nTPM: 45.0
Min nTPM: 22.2
P10809_1012
22.2
P10809_1027
45.0
P10809_1046
30.8
P10809_1065
29.5
P10809_1111
28.6
Naive CD4 T-cell nTPM: 7.0
Samples: 6
Max nTPM: 16.0
Min nTPM: 3.5
P10809_1015
4.7
P10809_1030
5.6
P10809_1049
3.5
P10809_1068
4.7
P10809_1085
16.0
P10809_1112
7.5
Naive CD8 T-cell nTPM: 23.6
Samples: 6
Max nTPM: 46.6
Min nTPM: 11.0
P10809_1016
11.0
P10809_1031
13.1
P10809_1050
21.6
P10809_1069
31.1
P10809_1087
46.6
P10809_1110
18.4
T-reg nTPM: 13.1
Samples: 6
Max nTPM: 26.5
Min nTPM: 1.8
P10809_1018
11.2
P10809_1037
11.6
P10809_1056
26.5
P10809_1075
12.7
P10809_1094
1.8
P10809_1106
14.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
71.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 22.1
Samples: 4
Max nTPM: 33.5
Min nTPM: 11.3
RHH5202_R3573
33.5
RHH5230_R3602
11.3
RHH5259_R3631
11.3
RHH5288_R3660
32.4
Effector memory CD8 T-cell nTPM: 56.0
Samples: 4
Max nTPM: 85.0
Min nTPM: 33.0
RHH5203_R3574
85.0
RHH5231_R3603
44.4
RHH5260_R3632
33.0
RHH5289_R3661
61.4
MAIT T-cell nTPM: 36.4
Samples: 4
Max nTPM: 46.2
Min nTPM: 30.9
RHH5233_R3605
30.9
RHH5205_R3576
46.2
RHH5262_R3634
37.0
RHH5297_R3663
31.4
Memory CD4 T-cell TFH nTPM: 15.4
Samples: 4
Max nTPM: 23.9
Min nTPM: 11.9
RHH5300_R3666
12.0
RHH5236_R3608
13.8
RHH5265_R3637
11.9
RHH5208_R3579
23.9
Memory CD4 T-cell Th1 nTPM: 22.2
Samples: 4
Max nTPM: 27.1
Min nTPM: 17.9
RHH5210_R3581
27.1
RHH5302_R3668
22.0
RHH5238_R3610
17.9
RHH5267_R3639
21.6
Memory CD4 T-cell Th1/Th17 nTPM: 18.4
Samples: 4
Max nTPM: 35.6
Min nTPM: 6.2
RHH5303_R3669
22.3
RHH5211_R3582
35.6
RHH5239_R3611
6.2
RHH5268_R3640
9.6
Memory CD4 T-cell Th17 nTPM: 13.0
Samples: 4
Max nTPM: 18.5
Min nTPM: 9.7
RHH5304_R3670
18.5
RHH5212_R3583
13.3
RHH5240_R3612
9.7
RHH5269_R3641
10.6
Memory CD4 T-cell Th2 nTPM: 16.4
Samples: 4
Max nTPM: 26.1
Min nTPM: 9.9
RHH5305_R3671
11.0
RHH5213_R3584
26.1
RHH5241_R3613
9.9
RHH5270_R3642
18.5
Naive CD4 T-cell nTPM: 12.1
Samples: 4
Max nTPM: 15.6
Min nTPM: 8.9
RHH5306_R3672
9.2
RHH5214_R3585
15.6
RHH5242_R3614
14.7
RHH5271_R3643
8.9
Naive CD8 T-cell nTPM: 17.5
Samples: 4
Max nTPM: 24.1
Min nTPM: 10.7
RHH5201_R3572
24.1
RHH5229_R3601
10.7
RHH5258_R3630
18.7
RHH5287_R3659
16.3
Non-Vd2 gdTCR nTPM: 71.6
Samples: 4
Max nTPM: 94.8
Min nTPM: 35.3
RHH5235_R3607
35.3
RHH5264_R3636
94.8
RHH5207_R3578
71.9
RHH5299_R3665
84.4
T-reg nTPM: 17.3
Samples: 4
Max nTPM: 22.2
Min nTPM: 14.6
RHH5301_R3667
14.6
RHH5237_R3609
17.5
RHH5266_R3638
14.7
RHH5209_R3580
22.2
Terminal effector memory CD4 T-cell nTPM: 38.0
Samples: 2
Max nTPM: 40.2
Min nTPM: 35.8
RHH5243_R3615
40.2
RHH5272_R3644
35.8
Terminal effector memory CD8 T-cell nTPM: 71.0
Samples: 4
Max nTPM: 101.0
Min nTPM: 46.8
RHH5232_R3604
60.7
RHH5204_R3575
101.0
RHH5261_R3633
46.8
RHH5296_R3662
75.6
Vd2 gdTCR nTPM: 56.7
Samples: 4
Max nTPM: 102.6
Min nTPM: 31.9
RHH5234_R3606
43.7
RHH5206_R3577
102.6
RHH5263_R3635
31.9
RHH5298_R3664
48.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
