HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.0 nTPM
HPA Brain:19.2 nTPM
GTEx:33.0 nTPM
FANTOM5:68.6 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:7.0 nTPM
Allen mouse:12.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Hippocampus
nTPM: 17.8
1898 Male, age 80, left hemisphere 20.2
2529 Female, age 94, left hemisphere 20.0
2148 Female, age 91, left hemisphere 19.5
2621 Female, age 67, right hemisphere 17.7
1855 Male, age 76, left hemisphere 17.1
1911 Female, age 85, right hemisphere 12.4
Dentate gyrus
nTPM: 16.8
2010 Male, age 76, both hemispheres 24.8
2528 Male, age 74, both hemispheres 19.7
2530 Female, age 94, left hemisphere 16.8
1927 Female, age 91, both hemispheres 14.5
2531 Female, age 67, both hemispheres 14.3
2246 Female, age 85, both hemispheres 10.7
Entorhinal gyrus
nTPM: 16.3
2117 Female, age 91, right hemisphere 23.7
2686 Male, age 75, right hemisphere 18.1
1787 Male, age 76, left hemisphere 15.9
1938 Female, age 85, left hemisphere 15.6
2764 Male, age 80, right hemisphere 15.4
2613 Female, age 94, left hemisphere 9.2
Hippocampus, CA1
nTPM: 19.2
2749 Male, age 80, left hemisphere 26.4
2527 Male, age 74, both hemispheres 19.7
2082 Female, age 91, right hemisphere 18.7
2045 Male, age 76, both hemispheres 17.2
1873 Female, age 85, both hemispheres 14.1
Hippocampus, CA2
nTPM: 17.2
2249 Male, age 74, both hemispheres 28.9
1963 Male, age 80, left hemisphere 17.3
2113 Female, age 91, right hemisphere 16.6
2437 Female, age 94, left hemisphere 14.7
1940 Female, age 85, left hemisphere 13.0
1892 Male, age 76, both hemispheres 12.7
Hippocampus, CA3
nTPM: 18.6
2137 Male, age 80, left hemisphere 25.9
2436 Male, age 74, both hemispheres 24.3
1867 Male, age 76, both hemispheres 22.8
2861 Female, age 67, both hemispheres 16.2
1891 Female, age 85, both hemispheres 13.1
2620 Female, age 94, left hemisphere 9.1
Parahippocampal cortex
nTPM: 17.9
2018 Male, age 76, both hemispheres 28.1
1850 Male, age 80, both hemispheres 20.2
2250 Female, age 67, right hemisphere 19.7
2532 Female, age 72, left hemisphere 19.2
2692 Male, age 74, both hemispheres 18.7
1990 Female, age 91, right hemisphere 18.0
2245 Female, age 91, both hemispheres 17.0
1933 Female, age 85, both hemispheres 14.4
2622 Female, age 67, right hemisphere 12.8
2693 Female, age 94, both hemispheres 11.2
Perirhinal gyrus
nTPM: 14.6
1794 Male, age 80, right hemisphere 18.0
1847 Female, age 91, left hemisphere 16.6
1841 Female, age 85, right hemisphere 15.7
2521 Female, age 94, right hemisphere 12.2
2848 Male, age 76, right hemisphere 10.7
Subiculum
nTPM: 18.3
2042 Male, age 76, both hemispheres 27.7
1901 Male, age 80, both hemispheres 17.9
2438 Female, age 94, left hemisphere 17.6
2619 Male, age 74, both hemispheres 17.2
2729 Female, age 91, right hemisphere 16.5
1977 Female, age 85, both hemispheres 13.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.0
Samples: 197

Max nTPM: 268.0
Min nTPM: 6.9
Std nTPM: 41.0
Median nTPM: 19.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 268.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 255.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 232.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 188.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 175.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 172.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 152.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 147.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 141.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 124.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 122.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.6
FF:10169-103B7 60 years, female 117.3
FF:10153-102I9 76 years, female 19.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.8
Pig sample Sample description nTPM
Subiculum
nTPM: 2.2
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.4
Sample A Female 2.1
Sample B Female 1.4
Sample C Male 2.8
Sample D Male 2.3
Dorsal hippocampus
nTPM: 2.6
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.0
Sample A Female 2.2
Sample B Female 3.3
Sample C Male 2.0
Sample D Male 2.8
Entorhinal cortex
nTPM: 1.8
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.3
Sample A Female 1.7
Sample B Female 2.1
Sample C Male 2.0
Sample D Male 1.3
Ventral hippocampus
nTPM: 3.8
Samples: 4

Max nTPM: 6.3
Min nTPM: 1.8
Sample A Female 6.3
Sample B Female 2.4
Sample C Male 4.8
Sample D Male 1.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 7.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.0
Samples: 4

Max nTPM: 13.0
Min nTPM: 3.4
Sample A Male 7.4
Sample B Male 13.0
Sample C Female 3.4
Sample D Female 4.1
Hippocampal formation
nTPM: 4.1
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.9
Sample A Male 3.9
Sample B Male 4.4
Sample C Female 4.3
Sample D Female 3.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.6
576421 Antisense, RP_040826_01_G07, Mouse strain C57BL/6J (56 days, male) 12.6

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