HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:32.2 nTPM
HPA Brain:88.6 nTPM
GTEx:32.2 nTPM
FANTOM5:91.5 Scaled Tags Per Million
Pig:97.6 nTPM
Mouse:58.3 nTPM
Allen mouse:4.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027545Antibody CAB004851
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 88.6
Sample id Sample description nTPM
Hippocampus
nTPM: 69.1
2148 Female, age 91, left hemisphere 80.1
1855 Male, age 76, left hemisphere 77.6
2621 Female, age 67, right hemisphere 70.9
1898 Male, age 80, left hemisphere 69.1
1911 Female, age 85, right hemisphere 64.0
2529 Female, age 94, left hemisphere 52.6
Dentate gyrus
nTPM: 70.8
2531 Female, age 67, both hemispheres 97.6
2246 Female, age 85, both hemispheres 75.6
2010 Male, age 76, both hemispheres 72.2
1927 Female, age 91, both hemispheres 71.7
2528 Male, age 74, both hemispheres 61.1
2530 Female, age 94, left hemisphere 46.7
Entorhinal gyrus
nTPM: 63.5
2764 Male, age 80, right hemisphere 72.5
1938 Female, age 85, left hemisphere 70.3
1787 Male, age 76, left hemisphere 69.4
2613 Female, age 94, left hemisphere 64.1
2686 Male, age 75, right hemisphere 56.9
2117 Female, age 91, right hemisphere 47.6
Hippocampus, CA1
nTPM: 79.9
2045 Male, age 76, both hemispheres 120.0
1873 Female, age 85, both hemispheres 75.9
2749 Male, age 80, left hemisphere 74.2
2082 Female, age 91, right hemisphere 73.7
2527 Male, age 74, both hemispheres 55.5
Hippocampus, CA2
nTPM: 62.4
1940 Female, age 85, left hemisphere 99.9
2113 Female, age 91, right hemisphere 66.1
1892 Male, age 76, both hemispheres 61.6
2249 Male, age 74, both hemispheres 54.3
2437 Female, age 94, left hemisphere 50.3
1963 Male, age 80, left hemisphere 42.2
Hippocampus, CA3
nTPM: 86.4
2620 Female, age 94, left hemisphere 144.4
2861 Female, age 67, both hemispheres 95.7
2137 Male, age 80, left hemisphere 82.3
1867 Male, age 76, both hemispheres 74.4
2436 Male, age 74, both hemispheres 60.8
1891 Female, age 85, both hemispheres 60.7
Parahippocampal cortex
nTPM: 67.4
1933 Female, age 85, both hemispheres 84.4
1850 Male, age 80, both hemispheres 81.7
2245 Female, age 91, both hemispheres 76.9
2693 Female, age 94, both hemispheres 76.4
2622 Female, age 67, right hemisphere 70.4
2018 Male, age 76, both hemispheres 68.5
2532 Female, age 72, left hemisphere 59.6
2250 Female, age 67, right hemisphere 59.2
1990 Female, age 91, right hemisphere 58.7
2692 Male, age 74, both hemispheres 38.6
Perirhinal gyrus
nTPM: 88.6
1847 Female, age 91, left hemisphere 99.5
1794 Male, age 80, right hemisphere 95.2
1841 Female, age 85, right hemisphere 86.2
2521 Female, age 94, right hemisphere 82.2
2848 Male, age 76, right hemisphere 79.7
Subiculum
nTPM: 55.6
2729 Female, age 91, right hemisphere 71.6
1977 Female, age 85, both hemispheres 59.0
1901 Male, age 80, both hemispheres 58.5
2042 Male, age 76, both hemispheres 57.8
2619 Male, age 74, both hemispheres 50.2
2438 Female, age 94, left hemisphere 36.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.2
Samples: 197

Max nTPM: 75.4
Min nTPM: 10.8
Std nTPM: 11.5
Median nTPM: 30.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 75.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 64.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 62.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 59.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 59.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 58.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 56.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 55.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 54.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 54.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 54.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 91.5
FF:10169-103B7 60 years, female 94.5
FF:10153-102I9 76 years, female 88.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 97.6
Pig sample Sample description nTPM
Subiculum
nTPM: 52.8
Samples: 4

Max nTPM: 62.0
Min nTPM: 45.4
Sample A Female 62.0
Sample B Female 45.4
Sample C Male 56.5
Sample D Male 47.2
Dorsal hippocampus
nTPM: 97.6
Samples: 4

Max nTPM: 134.3
Min nTPM: 62.0
Sample A Female 134.3
Sample B Female 109.0
Sample C Male 62.0
Sample D Male 85.2
Entorhinal cortex
nTPM: 42.9
Samples: 4

Max nTPM: 54.3
Min nTPM: 34.3
Sample A Female 54.3
Sample B Female 39.6
Sample C Male 43.5
Sample D Male 34.3
Ventral hippocampus
nTPM: 77.0
Samples: 4

Max nTPM: 105.2
Min nTPM: 56.0
Sample A Female 71.2
Sample B Female 56.0
Sample C Male 75.4
Sample D Male 105.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 58.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.4
Samples: 4

Max nTPM: 24.9
Min nTPM: 17.3
Sample A Male 21.9
Sample B Male 17.3
Sample C Female 24.9
Sample D Female 17.6
Hippocampal formation
nTPM: 58.3
Samples: 4

Max nTPM: 82.6
Min nTPM: 40.9
Sample A Male 40.9
Sample B Male 56.4
Sample C Female 82.6
Sample D Female 53.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.1
77464938 Antisense, RP_070129_02_E05, Mouse strain C57BL/6J (56 days, male) 6.6
2029 Antisense, RP_Baylor_253874, Mouse strain C57BL/6J (56 days, male) 1.7

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