HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:178.1 nTPM
HPA Brain:389.9 nTPM
GTEx:178.1 nTPM
FANTOM5:1034.0 Scaled Tags Per Million
Pig:271.1 nTPM
Mouse:434.5 nTPM
Allen mouse:19.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA010122Antibody HPA071006Antibody CAB001999Antibody CAB002000
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells HighHighHighHigh









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 389.9
Sample id Sample description nTPM
Hippocampus
nTPM: 347.2
2621 Female, age 67, right hemisphere 530.6
2148 Female, age 91, left hemisphere 378.4
2529 Female, age 94, left hemisphere 322.6
1911 Female, age 85, right hemisphere 301.1
1898 Male, age 80, left hemisphere 277.3
1855 Male, age 76, left hemisphere 273.4
Dentate gyrus
nTPM: 322.0
1927 Female, age 91, both hemispheres 421.7
2531 Female, age 67, both hemispheres 412.4
2530 Female, age 94, left hemisphere 304.2
2246 Female, age 85, both hemispheres 285.5
2528 Male, age 74, both hemispheres 269.2
2010 Male, age 76, both hemispheres 239.3
Entorhinal gyrus
nTPM: 303.8
2613 Female, age 94, left hemisphere 472.5
2686 Male, age 75, right hemisphere 321.7
1938 Female, age 85, left hemisphere 288.4
2764 Male, age 80, right hemisphere 277.7
1787 Male, age 76, left hemisphere 274.2
2117 Female, age 91, right hemisphere 188.1
Hippocampus, CA1
nTPM: 331.4
2749 Male, age 80, left hemisphere 465.6
2527 Male, age 74, both hemispheres 355.2
1873 Female, age 85, both hemispheres 292.6
2082 Female, age 91, right hemisphere 282.6
2045 Male, age 76, both hemispheres 261.3
Hippocampus, CA2
nTPM: 286.3
1963 Male, age 80, left hemisphere 346.8
1892 Male, age 76, both hemispheres 302.4
2113 Female, age 91, right hemisphere 298.5
2249 Male, age 74, both hemispheres 285.6
2437 Female, age 94, left hemisphere 285.1
1940 Female, age 85, left hemisphere 199.7
Hippocampus, CA3
nTPM: 389.9
2620 Female, age 94, left hemisphere 565.6
2861 Female, age 67, both hemispheres 555.1
2137 Male, age 80, left hemisphere 481.1
2436 Male, age 74, both hemispheres 267.9
1867 Male, age 76, both hemispheres 250.7
1891 Female, age 85, both hemispheres 219.1
Parahippocampal cortex
nTPM: 307.7
2245 Female, age 91, both hemispheres 476.5
2622 Female, age 67, right hemisphere 377.0
2693 Female, age 94, both hemispheres 366.5
2250 Female, age 67, right hemisphere 337.6
2692 Male, age 74, both hemispheres 280.7
1850 Male, age 80, both hemispheres 264.2
2532 Female, age 72, left hemisphere 255.2
1933 Female, age 85, both hemispheres 251.5
1990 Female, age 91, right hemisphere 238.2
2018 Male, age 76, both hemispheres 230.0
Perirhinal gyrus
nTPM: 307.7
2521 Female, age 94, right hemisphere 350.5
1847 Female, age 91, left hemisphere 335.8
1794 Male, age 80, right hemisphere 297.9
2848 Male, age 76, right hemisphere 288.0
1841 Female, age 85, right hemisphere 266.1
Subiculum
nTPM: 241.0
2619 Male, age 74, both hemispheres 272.0
2729 Female, age 91, right hemisphere 267.0
1901 Male, age 80, both hemispheres 255.4
2438 Female, age 94, left hemisphere 231.2
2042 Male, age 76, both hemispheres 215.8
1977 Female, age 85, both hemispheres 204.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 178.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 178.1
Samples: 197

Max nTPM: 619.7
Min nTPM: 12.2
Std nTPM: 114.1
Median nTPM: 167.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 619.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 492.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 482.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 460.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 444.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 435.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 432.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 407.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 400.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 393.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 393.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1034.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1034.0
FF:10169-103B7 60 years, female 1235.9
FF:10153-102I9 76 years, female 832.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 271.1
Pig sample Sample description nTPM
Subiculum
nTPM: 230.9
Samples: 4

Max nTPM: 305.3
Min nTPM: 184.2
Sample A Female 305.3
Sample B Female 209.8
Sample C Male 224.4
Sample D Male 184.2
Dorsal hippocampus
nTPM: 230.5
Samples: 4

Max nTPM: 263.4
Min nTPM: 191.8
Sample A Female 263.4
Sample B Female 252.6
Sample C Male 191.8
Sample D Male 214.1
Entorhinal cortex
nTPM: 271.1
Samples: 4

Max nTPM: 313.5
Min nTPM: 242.3
Sample A Female 283.7
Sample B Female 242.3
Sample C Male 313.5
Sample D Male 244.9
Ventral hippocampus
nTPM: 223.4
Samples: 4

Max nTPM: 305.9
Min nTPM: 158.4
Sample A Female 158.4
Sample B Female 179.5
Sample C Male 249.7
Sample D Male 305.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 434.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 434.5
Samples: 4

Max nTPM: 456.3
Min nTPM: 414.3
Sample A Male 439.2
Sample B Male 414.3
Sample C Female 428.2
Sample D Female 456.3
Hippocampal formation
nTPM: 434.1
Samples: 4

Max nTPM: 445.7
Min nTPM: 419.5
Sample A Male 445.7
Sample B Male 429.6
Sample C Female 441.5
Sample D Female 419.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 19.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 19.6
68193007 Antisense, RP_040922_01_D12, Mouse strain C57BL/6J (56 days, male) 26.0
72109445 Antisense, RP_050712_04_G07, Mouse strain C57BL/6J (56 days, male) 17.4
72182975 Antisense, RP_050719_03_A03, Mouse strain C57BL/6J (56 days, male) 15.4
70918916 Antisense, RP_050712_04_G07, Mouse strain C57BL/6J (56 days, male) 11.1

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