MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.8 nTPM
HPA Brain:41.6 nTPM
GTEx:13.8 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:70.6 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.3
1827 Male, age 72, unknown 36.6
2019 Male, age 18, unknown 36.2
2828 Female, age 72, unknown 31.6
2586 Male, age 75, left hemisphere 30.3
2666 Male, age 74, left hemisphere 30.3
2219 Male, age 76, both hemispheres 26.9
2411 Female, age 72, unknown 24.8
1870 Female, age 42, unknown 23.6
1833 Male, age 53, unknown 21.9
1830 Male, age 51, unknown 21.3
Dorsal raphe nucleus
nTPM: 22.8
2298 Female, age 72, unknown 30.2
2047 Male, age 72, unknown 24.1
2750 Male, age 76, both hemispheres 21.5
1828 Male, age 53, unknown 21.1
2016 Female, age 72, unknown 17.1
Inferior colliculus
nTPM: 34.8
2097 Female, age 72, unknown 49.5
1890 Male, age 53, unknown 37.5
1848 Female, age 42, unknown 26.6
2849 Male, age 72, unknown 25.5
Median raphe nucleus
nTPM: 30.4
2220 Male, age 76, midline 30.4
Periaquaductal grey, anterior
nTPM: 32.8
1795 Male, age 51, unknown 36.2
1947 Male, age 18, unknown 33.4
2502 Female, age 75, unknown 28.7
Periaquaductal grey, dorsal
nTPM: 27.4
1840 Male, age 53, unknown 31.0
1831 Male, age 72, unknown 29.4
2464 Female, age 72, unknown 25.3
2850 Male, age 76, both hemispheres 23.7
Periaquaductal grey, lateral
nTPM: 21.7
2140 Male, age 76, both hemispheres 23.6
2053 Male, age 18, unknown 21.0
2272 Male, age 74, both hemispheres 20.4
Pretectal area
nTPM: 41.6
1816 Male, age 51, unknown 71.0
2007 Male, age 72, unknown 64.8
1817 Female, age 42, unknown 60.0
1815 Male, age 53, unknown 53.2
1944 Female, age 72, unknown 47.8
2224 Female, age 72, unknown 35.1
2667 Female, age 75, unknown 31.1
2407 Male, age 75, both hemispheres 28.1
2825 Male, age 18, unknown 24.2
2316 Male, age 76, right hemisphere 22.4
2273 Male, age 74, both hemispheres 20.2
Red nucleus
nTPM: 17.7
2785 Male, age 18, unknown 34.3
2584 Male, age 75, left hemisphere 27.5
2588 Male, age 74, left hemisphere 17.6
2725 Female, age 75, unknown 16.8
1821 Female, age 72, unknown 15.8
2503 Female, age 72, unknown 15.8
2823 Male, age 76, right hemisphere 15.3
1954 Female, age 42, unknown 15.1
2227 Male, age 72, unknown 14.7
2769 Male, age 72, unknown 14.4
1865 Male, age 51, unknown 12.8
1904 Male, age 53, unknown 12.1
Substantia nigra
nTPM: 27.2
1889 Female, age 72, unknown 46.6
2590 Female, age 75, unknown 31.3
2665 Male, age 74, both hemispheres 29.8
2583 Male, age 75, right hemisphere 28.4
2409 Female, age 72, unknown 26.7
1916 Female, age 42, unknown 26.6
1851 Male, age 51, unknown 26.3
2241 Male, age 72, unknown 21.3
1941 Male, age 53, unknown 19.8
2699 Male, age 18, unknown 14.9
Superior colliculus
nTPM: 32.1
2664 Male, age 75, both hemispheres 41.6
2087 Female, age 72, unknown 41.4
1796 Male, age 53, unknown 38.2
2668 Female, age 75, unknown 36.6
2261 Male, age 18, unknown 32.7
1895 Male, age 76, right hemisphere 31.4
1913 Female, age 42, unknown 27.1
1839 Male, age 51, unknown 26.2
1995 Male, age 72, unknown 25.8
2587 Male, age 74, left hemisphere 19.7
Ventral tegmental area
nTPM: 25.8
2218 Male, age 76, both hemispheres 29.9
2021 Male, age 53, unknown 28.6
1915 Female, age 42, unknown 25.4
1942 Male, age 51, unknown 24.9
2410 Female, age 72, unknown 24.5
2223 Female, age 72, unknown 21.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.8
Samples: 139

Max nTPM: 28.4
Min nTPM: 2.2
Std nTPM: 6.0
Median nTPM: 13.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 27.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 27.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 26.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 23.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 23.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 23.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 23.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 22.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.9
FF:10158-103A5 76 years, female 2.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.0
Samples: 4

Max nTPM: 19.1
Min nTPM: 7.2
Sample A Female 19.1
Sample B Female 12.1
Sample C Male 17.5
Sample D Male 7.2
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 29.8
Min nTPM: 8.5
Sample A Female 8.5
Sample B Female 14.6
Sample C Male 29.8
Sample D Male 18.6
Periaqueductal gray
nTPM: 14.0
Samples: 3

Max nTPM: 17.0
Min nTPM: 11.7
Sample B Female 13.4
Sample C Male 17.0
Sample D Male 11.7
Superior colliculi
nTPM: 17.9
Samples: 4

Max nTPM: 20.6
Min nTPM: 15.7
Sample A Female 18.2
Sample B Female 16.9
Sample C Male 20.6
Sample D Male 15.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.6
Samples: 4

Max nTPM: 75.6
Min nTPM: 66.5
Sample A Male 66.5
Sample B Male 68.0
Sample C Female 75.6
Sample D Female 72.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
75774678 Antisense, RP_060530_01_D03, Mouse strain C57BL/6J (56 days, male) 9.6
671241 Antisense, RP_040914_02_A08, Mouse strain C57BL/6J (56 days, male) 5.0

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