HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:406.6 nTPM
HPA Brain:137.7 nTPM
GTEx:406.6 nTPM
FANTOM5:307.3 Scaled Tags Per Million
Pig:136.0 nTPM
Mouse:182.3 nTPM
Allen mouse:9.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048587
Glial cells Low
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 137.7
Sample id Sample description nTPM
Hippocampus
nTPM: 134.8
2529 Female, age 94, left hemisphere 167.2
1898 Male, age 80, left hemisphere 159.0
2621 Female, age 67, right hemisphere 138.5
2148 Female, age 91, left hemisphere 119.5
1911 Female, age 85, right hemisphere 112.4
1855 Male, age 76, left hemisphere 112.3
Dentate gyrus
nTPM: 130.6
2530 Female, age 94, left hemisphere 179.6
2010 Male, age 76, both hemispheres 146.8
1927 Female, age 91, both hemispheres 123.1
2531 Female, age 67, both hemispheres 118.2
2528 Male, age 74, both hemispheres 112.2
2246 Female, age 85, both hemispheres 103.6
Entorhinal gyrus
nTPM: 120.2
1787 Male, age 76, left hemisphere 130.7
2764 Male, age 80, right hemisphere 128.4
1938 Female, age 85, left hemisphere 126.5
2613 Female, age 94, left hemisphere 124.2
2117 Female, age 91, right hemisphere 109.8
2686 Male, age 75, right hemisphere 101.7
Hippocampus, CA1
nTPM: 137.7
2749 Male, age 80, left hemisphere 233.6
2527 Male, age 74, both hemispheres 136.1
1873 Female, age 85, both hemispheres 117.4
2045 Male, age 76, both hemispheres 103.7
2082 Female, age 91, right hemisphere 97.8
Hippocampus, CA2
nTPM: 129.6
1963 Male, age 80, left hemisphere 181.3
2437 Female, age 94, left hemisphere 145.5
1892 Male, age 76, both hemispheres 134.9
2249 Male, age 74, both hemispheres 118.8
2113 Female, age 91, right hemisphere 100.9
1940 Female, age 85, left hemisphere 96.3
Hippocampus, CA3
nTPM: 119.2
2137 Male, age 80, left hemisphere 165.7
2861 Female, age 67, both hemispheres 142.9
1867 Male, age 76, both hemispheres 127.8
2436 Male, age 74, both hemispheres 107.5
1891 Female, age 85, both hemispheres 95.6
2620 Female, age 94, left hemisphere 75.4
Parahippocampal cortex
nTPM: 112.4
2245 Female, age 91, both hemispheres 137.8
2250 Female, age 67, right hemisphere 135.3
2018 Male, age 76, both hemispheres 123.3
1933 Female, age 85, both hemispheres 114.8
1850 Male, age 80, both hemispheres 114.5
1990 Female, age 91, right hemisphere 110.4
2622 Female, age 67, right hemisphere 109.7
2532 Female, age 72, left hemisphere 108.9
2692 Male, age 74, both hemispheres 96.1
2693 Female, age 94, both hemispheres 73.5
Perirhinal gyrus
nTPM: 121.7
2521 Female, age 94, right hemisphere 137.5
1794 Male, age 80, right hemisphere 135.4
1847 Female, age 91, left hemisphere 134.7
1841 Female, age 85, right hemisphere 106.9
2848 Male, age 76, right hemisphere 94.0
Subiculum
nTPM: 111.9
1901 Male, age 80, both hemispheres 129.5
1977 Female, age 85, both hemispheres 121.8
2438 Female, age 94, left hemisphere 121.3
2619 Male, age 74, both hemispheres 106.8
2729 Female, age 91, right hemisphere 102.2
2042 Male, age 76, both hemispheres 89.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 406.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 406.6
Samples: 197

Max nTPM: 1068.8
Min nTPM: 85.3
Std nTPM: 160.3
Median nTPM: 376.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1068.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 967.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 905.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 872.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 783.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 763.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 731.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 717.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 708.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 697.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 697.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 307.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 307.3
FF:10153-102I9 76 years, female 310.3
FF:10169-103B7 60 years, female 304.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 136.0
Pig sample Sample description nTPM
Subiculum
nTPM: 96.5
Samples: 4

Max nTPM: 132.6
Min nTPM: 79.3
Sample A Female 132.6
Sample B Female 85.6
Sample C Male 79.3
Sample D Male 88.6
Dorsal hippocampus
nTPM: 136.0
Samples: 4

Max nTPM: 177.6
Min nTPM: 108.9
Sample A Female 177.6
Sample B Female 118.7
Sample C Male 138.8
Sample D Male 108.9
Entorhinal cortex
nTPM: 125.5
Samples: 4

Max nTPM: 129.9
Min nTPM: 116.6
Sample A Female 129.9
Sample B Female 128.0
Sample C Male 127.3
Sample D Male 116.6
Ventral hippocampus
nTPM: 113.5
Samples: 4

Max nTPM: 152.9
Min nTPM: 72.3
Sample A Female 103.7
Sample B Female 72.3
Sample C Male 125.1
Sample D Male 152.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 182.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 172.2
Samples: 4

Max nTPM: 180.6
Min nTPM: 166.9
Sample A Male 167.5
Sample B Male 173.6
Sample C Female 180.6
Sample D Female 166.9
Hippocampal formation
nTPM: 182.3
Samples: 4

Max nTPM: 206.6
Min nTPM: 167.3
Sample A Male 206.6
Sample B Male 176.5
Sample C Female 167.3
Sample D Female 178.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.9
68443298 Antisense, RP_050111_01_G03, Mouse strain C57BL/6J (56 days, male) 13.8
2280 Antisense, RP_Baylor_102835, Mouse strain C57BL/6J (56 days, male) 6.0
2279 Antisense, RP_Baylor_102835, Mouse strain C57BL/6J (56 days, male) 1.2

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