HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.3 nTPM
HPA Brain:27.7 nTPM
GTEx:13.3 nTPM
FANTOM5:46.3 Scaled Tags Per Million
Pig:64.1 nTPM
Mouse:0.8 nTPM
Allen mouse:1.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Hippocampus
nTPM: 27.7
2529 Female, age 94, left hemisphere 51.6
1911 Female, age 85, right hemisphere 39.7
1898 Male, age 80, left hemisphere 24.2
2148 Female, age 91, left hemisphere 23.1
2621 Female, age 67, right hemisphere 21.2
1855 Male, age 76, left hemisphere 6.6
Dentate gyrus
nTPM: 23.0
2528 Male, age 74, both hemispheres 56.9
2531 Female, age 67, both hemispheres 23.4
2530 Female, age 94, left hemisphere 19.4
2246 Female, age 85, both hemispheres 16.1
1927 Female, age 91, both hemispheres 15.0
2010 Male, age 76, both hemispheres 7.0
Entorhinal gyrus
nTPM: 11.2
2117 Female, age 91, right hemisphere 31.7
1787 Male, age 76, left hemisphere 8.9
2764 Male, age 80, right hemisphere 8.4
1938 Female, age 85, left hemisphere 8.1
2613 Female, age 94, left hemisphere 5.4
2686 Male, age 75, right hemisphere 4.8
Hippocampus, CA1
nTPM: 17.9
1873 Female, age 85, both hemispheres 33.6
2527 Male, age 74, both hemispheres 31.1
2082 Female, age 91, right hemisphere 13.1
2045 Male, age 76, both hemispheres 8.9
2749 Male, age 80, left hemisphere 2.7
Hippocampus, CA2
nTPM: 18.4
2249 Male, age 74, both hemispheres 32.3
2113 Female, age 91, right hemisphere 28.0
1963 Male, age 80, left hemisphere 17.4
2437 Female, age 94, left hemisphere 13.9
1940 Female, age 85, left hemisphere 13.2
1892 Male, age 76, both hemispheres 5.3
Hippocampus, CA3
nTPM: 20.6
1891 Female, age 85, both hemispheres 41.0
2620 Female, age 94, left hemisphere 31.8
2436 Male, age 74, both hemispheres 21.9
2861 Female, age 67, both hemispheres 16.5
1867 Male, age 76, both hemispheres 6.4
2137 Male, age 80, left hemisphere 6.0
Parahippocampal cortex
nTPM: 9.3
2245 Female, age 91, both hemispheres 17.8
1990 Female, age 91, right hemisphere 14.5
2250 Female, age 67, right hemisphere 10.4
1933 Female, age 85, both hemispheres 10.2
2532 Female, age 72, left hemisphere 9.0
2692 Male, age 74, both hemispheres 8.8
2018 Male, age 76, both hemispheres 8.6
1850 Male, age 80, both hemispheres 5.6
2693 Female, age 94, both hemispheres 4.7
2622 Female, age 67, right hemisphere 3.1
Perirhinal gyrus
nTPM: 7.9
1841 Female, age 85, right hemisphere 9.1
1794 Male, age 80, right hemisphere 8.6
2521 Female, age 94, right hemisphere 7.8
1847 Female, age 91, left hemisphere 7.1
2848 Male, age 76, right hemisphere 6.7
Subiculum
nTPM: 17.3
2729 Female, age 91, right hemisphere 41.6
1901 Male, age 80, both hemispheres 16.1
2619 Male, age 74, both hemispheres 15.6
1977 Female, age 85, both hemispheres 13.9
2042 Male, age 76, both hemispheres 10.1
2438 Female, age 94, left hemisphere 6.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.3
Samples: 197

Max nTPM: 79.0
Min nTPM: 0.6
Std nTPM: 13.9
Median nTPM: 8.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 79.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 72.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 67.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 65.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 64.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 64.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 55.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 51.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 44.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 41.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 41.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.3
FF:10153-102I9 76 years, female 54.3
FF:10169-103B7 60 years, female 38.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 64.1
Pig sample Sample description nTPM
Subiculum
nTPM: 64.1
Samples: 4

Max nTPM: 79.0
Min nTPM: 32.1
Sample A Female 70.3
Sample B Female 79.0
Sample C Male 74.9
Sample D Male 32.1
Dorsal hippocampus
nTPM: 50.0
Samples: 4

Max nTPM: 56.3
Min nTPM: 42.8
Sample A Female 42.8
Sample B Female 44.7
Sample C Male 56.3
Sample D Male 56.0
Entorhinal cortex
nTPM: 21.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 16.7
Sample A Female 16.7
Sample B Female 17.8
Sample C Male 32.3
Sample D Male 19.9
Ventral hippocampus
nTPM: 60.0
Samples: 4

Max nTPM: 97.0
Min nTPM: 32.7
Sample A Female 44.1
Sample B Female 66.3
Sample C Male 97.0
Sample D Male 32.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.6
Sample A Male 1.0
Sample B Male 0.6
Sample C Female 0.9
Sample D Female 0.7
Hippocampal formation
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Male 0.8
Sample B Male 0.8
Sample C Female 0.8
Sample D Female 0.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.5
1830 Antisense, RP_040526_01_H05, Mouse strain C57BL/6J (56 days, male) 1.5
1831 Antisense, RP_040526_01_H05, Mouse strain C57BL/6J (56 days, male) 1.2

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