BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:5.4 nTPM
HPA Brain:5.6 nTPM
GTEx:5.4 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:7.1 nTPM
Mouse:7.1 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039709
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.6
2290 Female, age 72, unknown 6.0
2846 Female, age 79, unknown 6.0
1857 Female, age 85, left hemisphere 5.8
2289 Male, age 61, right hemisphere 5.8
2481 Female, age 94, left hemisphere 5.8
2288 Male, age 75, left hemisphere 5.7
1854 Male, age 80, left hemisphere 5.2
1781 Male, age 74, unknown 4.6
Globus pallidus, externus
nTPM: 4.3
2646 Male, age 61, right hemisphere 5.2
2395 Male, age 75, both hemispheres 4.6
1996 Male, age 80, right hemisphere 4.5
2772 Female, age 79, unknown 3.7
2567 Female, age 72, unknown 3.3
Globus pallidus, internus
nTPM: 4.7
2037 Male, age 80, right hemisphere 6.0
2287 Male, age 75, right hemisphere 4.7
2566 Female, age 72, unknown 4.7
2778 Female, age 91, both hemispheres 4.7
1818 Male, age 74, unknown 4.6
2483 Female, age 94, right hemisphere 4.5
2111 Female, age 85, right hemisphere 4.0
Nucleus accumbens
nTPM: 5.2
1856 Female, age 91, right hemisphere 6.3
2698 Female, age 72, unknown 5.9
1783 Male, age 74, unknown 5.6
2286 Male, age 75, left hemisphere 5.4
2732 Male, age 80, right hemisphere 4.9
2391 Female, age 94, left hemisphere 4.7
1806 Female, age 85, left hemisphere 4.5
2824 Male, age 61, right hemisphere 4.3
Nucleus basalis of Meynert
nTPM: 5.1
2393 Male, age 80, right hemisphere 5.1
2484 Female, age 94, left hemisphere 5.1
2569 Male, age 61, both hemispheres 5.1
2821 Male, age 75, both hemispheres 5.0
Nucleus of the diagonal band
nTPM: 5.2
1979 Male, age 74, unknown 5.8
2195 Female, age 85, both hemispheres 5.7
1812 Female, age 91, both hemispheres 5.4
2029 Male, age 61, right hemisphere 4.8
2775 Male, age 80, right hemisphere 4.4
Putamen
nTPM: 5.3
2466 Female, age 79, unknown 5.9
2482 Female, age 94, left hemisphere 5.6
2489 Female, age 72, unknown 5.3
1829 Male, age 74, unknown 5.1
1838 Male, age 80, right hemisphere 5.1
1937 Female, age 91, right hemisphere 5.1
2647 Male, age 75, left hemisphere 5.0
Septal nuclei
nTPM: 5.1
2629 Female, age 94, right hemisphere 6.4
2031 Female, age 72, unknown 5.5
1960 Male, age 74, unknown 5.4
2059 Female, age 85, both hemispheres 4.8
2199 Male, age 80, right hemisphere 4.8
2009 Female, age 91, both hemispheres 4.3
2394 Male, age 61, left hemisphere 4.3
Stria terminalis, bed nucleus
nTPM: 4.8
2201 Male, age 74, unknown 5.5
1974 Female, age 91, both hemispheres 4.6
2486 Female, age 94, both hemispheres 4.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 5.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.4
Samples: 246

Max nTPM: 8.6
Min nTPM: 3.5
Std nTPM: 0.8
Median nTPM: 5.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 8.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 7.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 7.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 7.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 7.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 7.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 7.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 7.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 7.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 7.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 7.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.4
Samples: 246

Max nTPM: 9.8
Min nTPM: 3.7
Std nTPM: 0.8
Median nTPM: 5.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 9.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 9.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 8.6
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 8.1
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 7.9
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 7.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 7.6
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 7.6
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 7.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 7.2
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 7.2
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Brain - Putamen (basal ganglia)
Average nTPM: 5.3
Samples: 205

Max nTPM: 8.5
Min nTPM: 3.3
Std nTPM: 0.7
Median nTPM: 5.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 8.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 8.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 7.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 7.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 6.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 6.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 6.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 6.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 6.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 6.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 6.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.7
FF:10164-103B2 76 years, female 13.7
Nucleus accumbens
Scaled Tags Per Million: 10.2
FF:10037-101F1 23-56 years, mixed 10.2
Putamen
Scaled Tags Per Million: 13.6
FF:10176-103C5 60 years, female 13.6
Globus pallidus
Scaled Tags Per Million: 8.7
FF:10161-103A8 76 years, female 11.1
FF:10175-103C4 60 years, female 6.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.1
Pig sample Sample description nTPM
Caudate
nTPM: 7.1
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.5
Sample A Female 6.9
Sample B Female 6.5
Sample C Male 7.6
Sample D Male 7.3
Putamen
nTPM: 6.7
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.2
Sample A Female 7.0
Sample B Female 6.5
Sample C Male 6.2
Sample D Male 7.1
Septum
nTPM: 6.3
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.8
Sample A Female 7.0
Sample B Female 6.3
Sample C Male 5.8
Sample D Male 6.2
Ventral pallidum
nTPM: 7.1
Samples: 4

Max nTPM: 8.5
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 7.3
Sample C Male 6.2
Sample D Male 8.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.9
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.4
Sample A Male 6.9
Sample B Male 7.8
Sample C Female 6.6
Sample D Female 6.4
Septum
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.1
Sample A Male 6.7
Sample B Male 5.2
Sample C Female 6.3
Sample D Female 5.1
Ventral forebrain
nTPM: 7.1
Samples: 4

Max nTPM: 8.5
Min nTPM: 6.5
Sample A Male 6.7
Sample B Male 6.5
Sample C Female 6.7
Sample D Female 8.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69528016 Antisense, RP_050421_02_H09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69528016 Antisense, RP_050421_02_H09, Mouse strain C57BL/6J (56 days, male) 0.0

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