HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:26.9 nTPM
HPA Brain:104.8 nTPM
GTEx:26.9 nTPM
FANTOM5:200.7 Scaled Tags Per Million
Pig:63.2 nTPM
Mouse:77.6 nTPM
Allen mouse:5.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA012609Antibody HPA012723Antibody CAB011489
Glial cells MediumHighMedium
Neuronal cells HighHighHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 104.8
Sample id Sample description nTPM
Hippocampus
nTPM: 100.2
2621 Female, age 67, right hemisphere 104.4
2529 Female, age 94, left hemisphere 103.4
2148 Female, age 91, left hemisphere 102.6
1855 Male, age 76, left hemisphere 102.5
1898 Male, age 80, left hemisphere 101.5
1911 Female, age 85, right hemisphere 87.0
Dentate gyrus
nTPM: 101.7
2530 Female, age 94, left hemisphere 111.4
2010 Male, age 76, both hemispheres 106.0
2531 Female, age 67, both hemispheres 105.2
2246 Female, age 85, both hemispheres 104.5
1927 Female, age 91, both hemispheres 94.1
2528 Male, age 74, both hemispheres 88.9
Entorhinal gyrus
nTPM: 100.1
2764 Male, age 80, right hemisphere 107.6
2613 Female, age 94, left hemisphere 103.2
2117 Female, age 91, right hemisphere 102.4
1787 Male, age 76, left hemisphere 99.6
1938 Female, age 85, left hemisphere 99.2
2686 Male, age 75, right hemisphere 88.7
Hippocampus, CA1
nTPM: 104.8
2749 Male, age 80, left hemisphere 120.4
2045 Male, age 76, both hemispheres 109.7
1873 Female, age 85, both hemispheres 104.0
2082 Female, age 91, right hemisphere 96.4
2527 Male, age 74, both hemispheres 93.7
Hippocampus, CA2
nTPM: 99.0
1963 Male, age 80, left hemisphere 105.4
1892 Male, age 76, both hemispheres 104.2
2113 Female, age 91, right hemisphere 98.1
1940 Female, age 85, left hemisphere 97.5
2437 Female, age 94, left hemisphere 96.6
2249 Male, age 74, both hemispheres 92.6
Hippocampus, CA3
nTPM: 99.7
2620 Female, age 94, left hemisphere 123.4
2137 Male, age 80, left hemisphere 109.2
1867 Male, age 76, both hemispheres 98.9
1891 Female, age 85, both hemispheres 93.9
2861 Female, age 67, both hemispheres 89.1
2436 Male, age 74, both hemispheres 83.6
Parahippocampal cortex
nTPM: 94.9
2245 Female, age 91, both hemispheres 109.2
1850 Male, age 80, both hemispheres 106.6
2532 Female, age 72, left hemisphere 104.7
1990 Female, age 91, right hemisphere 97.4
2250 Female, age 67, right hemisphere 93.3
1933 Female, age 85, both hemispheres 92.6
2018 Male, age 76, both hemispheres 92.2
2693 Female, age 94, both hemispheres 91.3
2692 Male, age 74, both hemispheres 84.6
2622 Female, age 67, right hemisphere 77.0
Perirhinal gyrus
nTPM: 104.6
2848 Male, age 76, right hemisphere 110.8
1794 Male, age 80, right hemisphere 107.6
1847 Female, age 91, left hemisphere 102.1
2521 Female, age 94, right hemisphere 101.4
1841 Female, age 85, right hemisphere 101.2
Subiculum
nTPM: 97.3
1977 Female, age 85, both hemispheres 105.8
2438 Female, age 94, left hemisphere 100.9
2042 Male, age 76, both hemispheres 99.2
1901 Male, age 80, both hemispheres 98.1
2729 Female, age 91, right hemisphere 90.7
2619 Male, age 74, both hemispheres 89.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.9
Samples: 197

Max nTPM: 51.4
Min nTPM: 14.8
Std nTPM: 6.2
Median nTPM: 25.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 51.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 49.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 45.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 44.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 44.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 44.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 44.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 43.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 41.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 41.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 39.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 200.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 200.7
FF:10169-103B7 60 years, female 233.6
FF:10153-102I9 76 years, female 167.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 63.2
Pig sample Sample description nTPM
Subiculum
nTPM: 59.0
Samples: 4

Max nTPM: 73.3
Min nTPM: 52.1
Sample A Female 73.3
Sample B Female 52.1
Sample C Male 57.5
Sample D Male 52.9
Dorsal hippocampus
nTPM: 62.4
Samples: 4

Max nTPM: 75.6
Min nTPM: 47.8
Sample A Female 75.6
Sample B Female 64.3
Sample C Male 61.8
Sample D Male 47.8
Entorhinal cortex
nTPM: 60.2
Samples: 4

Max nTPM: 69.9
Min nTPM: 53.3
Sample A Female 69.9
Sample B Female 58.1
Sample C Male 59.3
Sample D Male 53.3
Ventral hippocampus
nTPM: 63.2
Samples: 4

Max nTPM: 75.0
Min nTPM: 44.7
Sample A Female 69.4
Sample B Female 44.7
Sample C Male 75.0
Sample D Male 63.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 77.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 75.7
Samples: 4

Max nTPM: 83.8
Min nTPM: 71.0
Sample A Male 72.2
Sample B Male 71.0
Sample C Female 75.7
Sample D Female 83.8
Hippocampal formation
nTPM: 77.7
Samples: 4

Max nTPM: 88.6
Min nTPM: 69.9
Sample A Male 69.9
Sample B Male 76.4
Sample C Female 88.6
Sample D Female 75.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.4
69980340 Antisense, RP_050512_04_D02, Mouse strain C57BL/6J (56 days, male) 10.2
69549673 Antisense, RP_050317_04_E09, Mouse strain C57BL/6J (56 days, male) 5.5
71211332 Antisense, RP_050816_01_C04, Mouse strain C57BL/6J (56 days, male) 0.4

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