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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.1
nTPM
Monaco:
47.4
nTPM
Schmiedel:
44.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
11.1
HPA sample
nTPM
gdT-cell nTPM: 10.4
Samples: 6
Max nTPM: 15.0
Min nTPM: 7.9
P10809_1007
7.9
P10809_1022
9.0
P10809_1041
15.0
P10809_1060
8.8
P10809_1077
13.1
P10809_1098
8.5
MAIT T-cell nTPM: 9.6
Samples: 6
Max nTPM: 14.8
Min nTPM: 5.2
P10809_1006
7.9
P10809_1024
10.4
P10809_1043
7.9
P10809_1062
14.8
P10809_1083
5.2
P10809_1097
11.6
Memory CD4 T-cell nTPM: 9.3
Samples: 6
Max nTPM: 12.9
Min nTPM: 5.1
P10809_1014
10.0
P10809_1026
5.1
P10809_1045
12.9
P10809_1064
7.5
P10809_1086
9.6
P10809_1113
10.9
Memory CD8 T-cell nTPM: 9.7
Samples: 5
Max nTPM: 11.2
Min nTPM: 8.3
P10809_1012
11.2
P10809_1027
8.3
P10809_1046
9.7
P10809_1065
8.5
P10809_1111
10.7
Naive CD4 T-cell nTPM: 10.0
Samples: 6
Max nTPM: 11.5
Min nTPM: 7.4
P10809_1015
9.9
P10809_1030
11.5
P10809_1049
10.7
P10809_1068
7.4
P10809_1085
10.0
P10809_1112
10.3
Naive CD8 T-cell nTPM: 10.3
Samples: 6
Max nTPM: 13.8
Min nTPM: 8.1
P10809_1016
8.1
P10809_1031
13.8
P10809_1050
8.6
P10809_1069
11.3
P10809_1087
9.7
P10809_1110
10.5
T-reg nTPM: 11.2
Samples: 6
Max nTPM: 22.5
Min nTPM: 4.4
P10809_1018
10.9
P10809_1037
4.4
P10809_1056
22.5
P10809_1075
7.7
P10809_1094
14.6
P10809_1106
6.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
47.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 44.3
Samples: 4
Max nTPM: 61.7
Min nTPM: 25.1
RHH5202_R3573
25.1
RHH5230_R3602
49.2
RHH5259_R3631
61.7
RHH5288_R3660
41.1
Effector memory CD8 T-cell nTPM: 47.4
Samples: 4
Max nTPM: 52.2
Min nTPM: 43.0
RHH5203_R3574
46.3
RHH5231_R3603
52.2
RHH5260_R3632
48.0
RHH5289_R3661
43.0
MAIT T-cell nTPM: 39.1
Samples: 4
Max nTPM: 51.7
Min nTPM: 31.4
RHH5233_R3605
31.4
RHH5205_R3576
51.7
RHH5262_R3634
36.6
RHH5297_R3663
36.6
Memory CD4 T-cell TFH nTPM: 38.4
Samples: 4
Max nTPM: 43.6
Min nTPM: 34.8
RHH5300_R3666
43.6
RHH5236_R3608
34.8
RHH5265_R3637
37.0
RHH5208_R3579
38.2
Memory CD4 T-cell Th1 nTPM: 32.9
Samples: 4
Max nTPM: 39.1
Min nTPM: 26.5
RHH5210_R3581
28.8
RHH5302_R3668
26.5
RHH5238_R3610
37.3
RHH5267_R3639
39.1
Memory CD4 T-cell Th1/Th17 nTPM: 42.0
Samples: 4
Max nTPM: 49.6
Min nTPM: 32.2
RHH5303_R3669
46.9
RHH5211_R3582
49.6
RHH5239_R3611
39.1
RHH5268_R3640
32.2
Memory CD4 T-cell Th17 nTPM: 40.6
Samples: 4
Max nTPM: 54.3
Min nTPM: 27.3
RHH5304_R3670
34.3
RHH5212_R3583
46.6
RHH5240_R3612
54.3
RHH5269_R3641
27.3
Memory CD4 T-cell Th2 nTPM: 36.4
Samples: 4
Max nTPM: 51.6
Min nTPM: 25.9
RHH5305_R3671
35.1
RHH5213_R3584
51.6
RHH5241_R3613
32.8
RHH5270_R3642
25.9
Naive CD4 T-cell nTPM: 22.7
Samples: 4
Max nTPM: 31.5
Min nTPM: 12.7
RHH5306_R3672
31.5
RHH5214_R3585
26.0
RHH5242_R3614
12.7
RHH5271_R3643
20.4
Naive CD8 T-cell nTPM: 40.7
Samples: 4
Max nTPM: 49.3
Min nTPM: 33.2
RHH5201_R3572
49.3
RHH5229_R3601
41.8
RHH5258_R3630
33.2
RHH5287_R3659
38.5
Non-Vd2 gdTCR nTPM: 40.3
Samples: 4
Max nTPM: 48.6
Min nTPM: 34.0
RHH5235_R3607
36.9
RHH5264_R3636
41.5
RHH5207_R3578
34.0
RHH5299_R3665
48.6
T-reg nTPM: 37.2
Samples: 4
Max nTPM: 44.7
Min nTPM: 27.8
RHH5301_R3667
32.9
RHH5237_R3609
27.8
RHH5266_R3638
44.7
RHH5209_R3580
43.3
Terminal effector memory CD4 T-cell nTPM: 39.2
Samples: 2
Max nTPM: 39.8
Min nTPM: 38.6
RHH5243_R3615
38.6
RHH5272_R3644
39.8
Terminal effector memory CD8 T-cell nTPM: 43.0
Samples: 4
Max nTPM: 58.1
Min nTPM: 29.4
RHH5232_R3604
58.1
RHH5204_R3575
29.4
RHH5261_R3633
43.7
RHH5296_R3662
40.6
Vd2 gdTCR nTPM: 43.6
Samples: 4
Max nTPM: 57.6
Min nTPM: 24.5
RHH5234_R3606
39.8
RHH5206_R3577
52.4
RHH5263_R3635
57.6
RHH5298_R3664
24.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
