HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.7 nTPM
HPA Brain:109.1 nTPM
GTEx:33.7 nTPM
FANTOM5:127.1 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:14.4 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 109.1
Sample id Sample description nTPM
Hippocampus
nTPM: 107.8
2529 Female, age 94, left hemisphere 123.3
1911 Female, age 85, right hemisphere 119.5
2148 Female, age 91, left hemisphere 115.3
1898 Male, age 80, left hemisphere 106.8
1855 Male, age 76, left hemisphere 105.7
2621 Female, age 67, right hemisphere 75.9
Dentate gyrus
nTPM: 95.8
2528 Male, age 74, both hemispheres 134.4
2010 Male, age 76, both hemispheres 109.7
2246 Female, age 85, both hemispheres 94.2
2530 Female, age 94, left hemisphere 85.8
1927 Female, age 91, both hemispheres 79.9
2531 Female, age 67, both hemispheres 70.9
Entorhinal gyrus
nTPM: 92.4
2117 Female, age 91, right hemisphere 129.5
1938 Female, age 85, left hemisphere 104.2
1787 Male, age 76, left hemisphere 95.1
2686 Male, age 75, right hemisphere 88.6
2764 Male, age 80, right hemisphere 77.6
2613 Female, age 94, left hemisphere 59.4
Hippocampus, CA1
nTPM: 98.2
2527 Male, age 74, both hemispheres 130.3
1873 Female, age 85, both hemispheres 116.4
2082 Female, age 91, right hemisphere 95.9
2045 Male, age 76, both hemispheres 91.4
2749 Male, age 80, left hemisphere 56.9
Hippocampus, CA2
nTPM: 85.5
2113 Female, age 91, right hemisphere 98.9
2249 Male, age 74, both hemispheres 98.1
1963 Male, age 80, left hemisphere 96.6
1940 Female, age 85, left hemisphere 82.3
2437 Female, age 94, left hemisphere 74.0
1892 Male, age 76, both hemispheres 62.8
Hippocampus, CA3
nTPM: 86.4
1891 Female, age 85, both hemispheres 124.9
2861 Female, age 67, both hemispheres 98.5
2620 Female, age 94, left hemisphere 92.5
2436 Male, age 74, both hemispheres 77.2
1867 Male, age 76, both hemispheres 68.8
2137 Male, age 80, left hemisphere 56.6
Parahippocampal cortex
nTPM: 91.9
2692 Male, age 74, both hemispheres 132.6
1933 Female, age 85, both hemispheres 101.8
2018 Male, age 76, both hemispheres 99.4
1990 Female, age 91, right hemisphere 96.1
2622 Female, age 67, right hemisphere 94.1
2250 Female, age 67, right hemisphere 89.3
1850 Male, age 80, both hemispheres 86.0
2245 Female, age 91, both hemispheres 76.5
2532 Female, age 72, left hemisphere 72.4
2693 Female, age 94, both hemispheres 71.1
Perirhinal gyrus
nTPM: 75.3
1847 Female, age 91, left hemisphere 87.5
1794 Male, age 80, right hemisphere 79.8
1841 Female, age 85, right hemisphere 75.3
2521 Female, age 94, right hemisphere 70.7
2848 Male, age 76, right hemisphere 63.2
Subiculum
nTPM: 109.1
2619 Male, age 74, both hemispheres 146.4
2729 Female, age 91, right hemisphere 137.1
1977 Female, age 85, both hemispheres 98.8
1901 Male, age 80, both hemispheres 95.0
2042 Male, age 76, both hemispheres 91.5
2438 Female, age 94, left hemisphere 85.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.7
Samples: 197

Max nTPM: 90.8
Min nTPM: 9.2
Std nTPM: 13.3
Median nTPM: 31.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 90.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 83.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 77.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 68.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 67.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 65.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 65.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 62.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 62.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 61.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 59.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 127.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 127.1
FF:10153-102I9 76 years, female 156.7
FF:10169-103B7 60 years, female 97.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.5
Pig sample Sample description nTPM
Subiculum
nTPM: 11.9
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.9
Sample A Female 12.8
Sample B Female 12.9
Sample C Male 10.9
Sample D Male 11.0
Dorsal hippocampus
nTPM: 15.5
Samples: 4

Max nTPM: 18.5
Min nTPM: 12.8
Sample A Female 18.5
Sample B Female 14.1
Sample C Male 16.5
Sample D Male 12.8
Entorhinal cortex
nTPM: 12.0
Samples: 4

Max nTPM: 15.2
Min nTPM: 9.6
Sample A Female 10.1
Sample B Female 15.2
Sample C Male 13.0
Sample D Male 9.6
Ventral hippocampus
nTPM: 13.1
Samples: 4

Max nTPM: 13.6
Min nTPM: 12.5
Sample A Female 12.8
Sample B Female 12.5
Sample C Male 13.6
Sample D Male 13.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.1
Samples: 4

Max nTPM: 12.3
Min nTPM: 9.4
Sample A Male 12.3
Sample B Male 11.0
Sample C Female 11.7
Sample D Female 9.4
Hippocampal formation
nTPM: 14.4
Samples: 4

Max nTPM: 15.7
Min nTPM: 13.3
Sample A Male 14.3
Sample B Male 13.3
Sample C Female 15.7
Sample D Female 14.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
68797727 Antisense, RP_050215_01_A06, Mouse strain C57BL/6J (56 days, male) 1.2
74583162 Antisense, RP_051214_02_F10, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org