MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.4 nTPM
HPA Brain:37.8 nTPM
GTEx:1.4 nTPM
FANTOM5:8.1 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:20.2 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.6
2219 Male, age 76, both hemispheres 17.6
1830 Male, age 51, unknown 17.0
1827 Male, age 72, unknown 16.3
2666 Male, age 74, left hemisphere 15.1
1833 Male, age 53, unknown 14.4
2019 Male, age 18, unknown 14.0
2828 Female, age 72, unknown 13.7
2586 Male, age 75, left hemisphere 13.3
1870 Female, age 42, unknown 13.1
2411 Female, age 72, unknown 11.2
Dorsal raphe nucleus
nTPM: 21.6
2016 Female, age 72, unknown 30.4
2298 Female, age 72, unknown 25.9
1828 Male, age 53, unknown 21.6
2047 Male, age 72, unknown 18.8
2750 Male, age 76, both hemispheres 11.2
Inferior colliculus
nTPM: 19.3
2849 Male, age 72, unknown 23.2
1848 Female, age 42, unknown 18.7
2097 Female, age 72, unknown 18.5
1890 Male, age 53, unknown 16.7
Median raphe nucleus
nTPM: 12.0
2220 Male, age 76, midline 12.0
Periaquaductal grey, anterior
nTPM: 21.8
1795 Male, age 51, unknown 28.6
2502 Female, age 75, unknown 19.7
1947 Male, age 18, unknown 17.0
Periaquaductal grey, dorsal
nTPM: 27.3
2850 Male, age 76, both hemispheres 37.2
1840 Male, age 53, unknown 28.9
1831 Male, age 72, unknown 25.1
2464 Female, age 72, unknown 18.0
Periaquaductal grey, lateral
nTPM: 37.8
2272 Male, age 74, both hemispheres 53.0
2140 Male, age 76, both hemispheres 33.6
2053 Male, age 18, unknown 26.9
Pretectal area
nTPM: 20.3
2273 Male, age 74, both hemispheres 56.6
2825 Male, age 18, unknown 26.7
2224 Female, age 72, unknown 26.2
2407 Male, age 75, both hemispheres 24.0
2667 Female, age 75, unknown 20.3
2316 Male, age 76, right hemisphere 16.5
1944 Female, age 72, unknown 12.0
1816 Male, age 51, unknown 11.5
2007 Male, age 72, unknown 10.3
1815 Male, age 53, unknown 10.2
1817 Female, age 42, unknown 9.1
Red nucleus
nTPM: 16.9
1954 Female, age 42, unknown 21.2
1865 Male, age 51, unknown 18.6
2823 Male, age 76, right hemisphere 18.6
1821 Female, age 72, unknown 18.0
2227 Male, age 72, unknown 17.6
2769 Male, age 72, unknown 17.4
2725 Female, age 75, unknown 17.2
2584 Male, age 75, left hemisphere 16.7
1904 Male, age 53, unknown 16.0
2785 Male, age 18, unknown 14.4
2503 Female, age 72, unknown 13.9
2588 Male, age 74, left hemisphere 13.1
Substantia nigra
nTPM: 16.7
1941 Male, age 53, unknown 26.9
2699 Male, age 18, unknown 19.3
2241 Male, age 72, unknown 18.8
1916 Female, age 42, unknown 17.8
2590 Female, age 75, unknown 16.9
2583 Male, age 75, right hemisphere 14.8
2409 Female, age 72, unknown 14.6
1851 Male, age 51, unknown 13.2
2665 Male, age 74, both hemispheres 12.7
1889 Female, age 72, unknown 11.6
Superior colliculus
nTPM: 18.2
2587 Male, age 74, left hemisphere 23.6
2664 Male, age 75, both hemispheres 23.0
1995 Male, age 72, unknown 20.1
2261 Male, age 18, unknown 19.9
1839 Male, age 51, unknown 19.7
1895 Male, age 76, right hemisphere 16.9
2668 Female, age 75, unknown 15.5
2087 Female, age 72, unknown 14.6
1796 Male, age 53, unknown 14.5
1913 Female, age 42, unknown 14.1
Ventral tegmental area
nTPM: 13.7
2021 Male, age 53, unknown 17.9
1915 Female, age 42, unknown 14.4
2223 Female, age 72, unknown 13.2
1942 Male, age 51, unknown 12.8
2218 Male, age 76, both hemispheres 12.5
2410 Female, age 72, unknown 11.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.4
Samples: 139

Max nTPM: 20.1
Min nTPM: 0.0
Std nTPM: 2.1
Median nTPM: 0.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 20.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 11.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 7.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 6.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 5.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 5.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 4.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 4.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 3.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 3.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 2.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.1
FF:10158-103A5 76 years, female 8.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.2
Samples: 4

Max nTPM: 15.6
Min nTPM: 9.0
Sample A Female 15.6
Sample B Female 12.0
Sample C Male 9.0
Sample D Male 12.1
Midbrain
nTPM: 11.1
Samples: 4

Max nTPM: 15.6
Min nTPM: 6.9
Sample A Female 15.6
Sample B Female 13.2
Sample C Male 6.9
Sample D Male 8.6
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 16.2
Min nTPM: 13.2
Sample B Female 15.6
Sample C Male 13.2
Sample D Male 16.2
Superior colliculi
nTPM: 10.4
Samples: 4

Max nTPM: 15.4
Min nTPM: 6.4
Sample A Female 15.4
Sample B Female 6.4
Sample C Male 6.6
Sample D Male 13.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.2
Samples: 4

Max nTPM: 22.3
Min nTPM: 18.5
Sample A Male 18.5
Sample B Male 20.5
Sample C Female 22.3
Sample D Female 19.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
71789970 Antisense, RP_050926_02_D07, Mouse strain C57BL/6J (56 days, male) 1.3
73818758 Antisense, RP_050926_02_D07, Mouse strain C57BL/6J (56 days, male) 0.3

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