HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:10.5 nTPM
HPA Brain:14.0 nTPM
GTEx:10.5 nTPM
FANTOM5:20.0 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:10.4 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040283Antibody HPA041946
Glial cells LowLow
Neuronal cells HighNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.0
Sample id Sample description nTPM
Hippocampus
nTPM: 13.3
2529 Female, age 94, left hemisphere 16.8
2148 Female, age 91, left hemisphere 14.7
1898 Male, age 80, left hemisphere 14.1
2621 Female, age 67, right hemisphere 12.2
1855 Male, age 76, left hemisphere 11.6
1911 Female, age 85, right hemisphere 10.5
Dentate gyrus
nTPM: 12.5
2530 Female, age 94, left hemisphere 15.0
2528 Male, age 74, both hemispheres 13.3
2531 Female, age 67, both hemispheres 12.8
1927 Female, age 91, both hemispheres 11.5
2010 Male, age 76, both hemispheres 11.5
2246 Female, age 85, both hemispheres 10.6
Entorhinal gyrus
nTPM: 14.0
2613 Female, age 94, left hemisphere 15.9
2686 Male, age 75, right hemisphere 15.2
2764 Male, age 80, right hemisphere 14.6
2117 Female, age 91, right hemisphere 14.1
1787 Male, age 76, left hemisphere 12.0
1938 Female, age 85, left hemisphere 11.9
Hippocampus, CA1
nTPM: 12.0
2082 Female, age 91, right hemisphere 14.1
2527 Male, age 74, both hemispheres 13.7
2749 Male, age 80, left hemisphere 12.1
1873 Female, age 85, both hemispheres 11.1
2045 Male, age 76, both hemispheres 9.2
Hippocampus, CA2
nTPM: 13.0
2113 Female, age 91, right hemisphere 14.4
1963 Male, age 80, left hemisphere 13.3
1940 Female, age 85, left hemisphere 13.2
2437 Female, age 94, left hemisphere 13.2
2249 Male, age 74, both hemispheres 12.7
1892 Male, age 76, both hemispheres 11.5
Hippocampus, CA3
nTPM: 12.3
2620 Female, age 94, left hemisphere 14.7
2861 Female, age 67, both hemispheres 13.2
2436 Male, age 74, both hemispheres 12.2
1867 Male, age 76, both hemispheres 11.8
1891 Female, age 85, both hemispheres 11.4
2137 Male, age 80, left hemisphere 10.4
Parahippocampal cortex
nTPM: 12.3
1850 Male, age 80, both hemispheres 13.3
2245 Female, age 91, both hemispheres 13.3
2692 Male, age 74, both hemispheres 13.3
2693 Female, age 94, both hemispheres 13.1
1990 Female, age 91, right hemisphere 12.7
2622 Female, age 67, right hemisphere 12.7
2532 Female, age 72, left hemisphere 12.4
2250 Female, age 67, right hemisphere 11.9
2018 Male, age 76, both hemispheres 10.1
1933 Female, age 85, both hemispheres 10.0
Perirhinal gyrus
nTPM: 11.0
1794 Male, age 80, right hemisphere 12.2
2521 Female, age 94, right hemisphere 11.9
1847 Female, age 91, left hemisphere 11.0
1841 Female, age 85, right hemisphere 10.0
2848 Male, age 76, right hemisphere 10.0
Subiculum
nTPM: 12.1
2619 Male, age 74, both hemispheres 13.6
2042 Male, age 76, both hemispheres 12.9
1901 Male, age 80, both hemispheres 12.5
2729 Female, age 91, right hemisphere 12.5
1977 Female, age 85, both hemispheres 11.4
2438 Female, age 94, left hemisphere 10.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.5
Samples: 197

Max nTPM: 17.7
Min nTPM: 2.9
Std nTPM: 2.5
Median nTPM: 10.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 17.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 17.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 16.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 15.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 15.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 15.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 15.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 14.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 14.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 14.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 14.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.0
FF:10169-103B7 60 years, female 21.8
FF:10153-102I9 76 years, female 18.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Subiculum
nTPM: 11.5
Samples: 4

Max nTPM: 12.8
Min nTPM: 10.8
Sample A Female 12.8
Sample B Female 10.9
Sample C Male 11.4
Sample D Male 10.8
Dorsal hippocampus
nTPM: 11.3
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.3
Sample A Female 12.7
Sample B Female 11.3
Sample C Male 9.3
Sample D Male 12.0
Entorhinal cortex
nTPM: 11.6
Samples: 4

Max nTPM: 12.3
Min nTPM: 11.0
Sample A Female 11.4
Sample B Female 11.0
Sample C Male 11.6
Sample D Male 12.3
Ventral hippocampus
nTPM: 11.4
Samples: 4

Max nTPM: 11.8
Min nTPM: 10.6
Sample A Female 11.8
Sample B Female 10.6
Sample C Male 11.7
Sample D Male 11.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 10.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.4
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.5
Sample A Male 10.9
Sample B Male 11.5
Sample C Female 10.5
Sample D Female 8.5
Hippocampal formation
nTPM: 10.2
Samples: 4

Max nTPM: 10.5
Min nTPM: 10.0
Sample A Male 10.2
Sample B Male 10.2
Sample C Female 10.5
Sample D Female 10.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
68637772 Antisense, RP_050126_01_E12, Mouse strain C57BL/6J (56 days, male) 1.2

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