BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.5 nTPM
HPA Brain:7.6 nTPM
GTEx:13.5 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.8
2288 Male, age 75, left hemisphere 7.3
2289 Male, age 61, right hemisphere 5.8
1854 Male, age 80, left hemisphere 5.3
1781 Male, age 74, unknown 4.2
2846 Female, age 79, unknown 2.7
1857 Female, age 85, left hemisphere 2.0
2290 Female, age 72, unknown 1.8
2481 Female, age 94, left hemisphere 1.4
Globus pallidus, externus
nTPM: 1.0
1996 Male, age 80, right hemisphere 1.7
2395 Male, age 75, both hemispheres 1.3
2772 Female, age 79, unknown 1.0
2646 Male, age 61, right hemisphere 0.5
2567 Female, age 72, unknown 0.4
Globus pallidus, internus
nTPM: 0.8
2566 Female, age 72, unknown 1.7
2037 Male, age 80, right hemisphere 1.4
2483 Female, age 94, right hemisphere 1.3
2287 Male, age 75, right hemisphere 0.9
1818 Male, age 74, unknown 0.2
2778 Female, age 91, both hemispheres 0.2
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 7.3
2824 Male, age 61, right hemisphere 13.1
2732 Male, age 80, right hemisphere 11.0
1856 Female, age 91, right hemisphere 9.6
2286 Male, age 75, left hemisphere 7.1
1783 Male, age 74, unknown 6.7
2698 Female, age 72, unknown 5.2
1806 Female, age 85, left hemisphere 4.6
2391 Female, age 94, left hemisphere 0.9
Nucleus basalis of Meynert
nTPM: 2.1
2821 Male, age 75, both hemispheres 3.1
2393 Male, age 80, right hemisphere 2.2
2484 Female, age 94, left hemisphere 1.7
2569 Male, age 61, both hemispheres 1.3
Nucleus of the diagonal band
nTPM: 7.6
1979 Male, age 74, unknown 10.0
2775 Male, age 80, right hemisphere 8.4
1812 Female, age 91, both hemispheres 7.2
2029 Male, age 61, right hemisphere 6.7
2195 Female, age 85, both hemispheres 5.7
Putamen
nTPM: 3.3
1838 Male, age 80, right hemisphere 6.0
1937 Female, age 91, right hemisphere 5.2
2647 Male, age 75, left hemisphere 4.7
2466 Female, age 79, unknown 2.7
1829 Male, age 74, unknown 1.7
2482 Female, age 94, left hemisphere 1.7
2489 Female, age 72, unknown 1.2
Septal nuclei
nTPM: 4.6
2009 Female, age 91, both hemispheres 6.4
2629 Female, age 94, right hemisphere 6.1
2031 Female, age 72, unknown 5.6
2394 Male, age 61, left hemisphere 4.2
2199 Male, age 80, right hemisphere 3.5
1960 Male, age 74, unknown 3.3
2059 Female, age 85, both hemispheres 3.2
Stria terminalis, bed nucleus
nTPM: 6.2
2201 Male, age 74, unknown 7.7
1974 Female, age 91, both hemispheres 6.0
2486 Female, age 94, both hemispheres 4.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.1
Samples: 246

Max nTPM: 19.4
Min nTPM: 0.0
Std nTPM: 1.9
Median nTPM: 1.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 19.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 8.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 8.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 7.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 7.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 7.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 6.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 6.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 6.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 6.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 5.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.5
Samples: 246

Max nTPM: 70.6
Min nTPM: 0.1
Std nTPM: 11.7
Median nTPM: 9.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 70.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 60.9
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 58.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 49.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 49.3
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 43.9
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 43.7
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 42.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 41.1
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 40.8
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 38.8
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Brain - Putamen (basal ganglia)
Average nTPM: 1.7
Samples: 205

Max nTPM: 9.7
Min nTPM: 0.0
Std nTPM: 1.3
Median nTPM: 1.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 9.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 7.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 6.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 5.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 5.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 5.1
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 4.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 4.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 4.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 4.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 4.6
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