BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:24.6 nTPM
HPA Brain:50.3 nTPM
GTEx:24.6 nTPM
FANTOM5:105.8 Scaled Tags Per Million
Pig:54.3 nTPM
Mouse:72.8 nTPM
Allen mouse:1.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA000528
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.7
2481 Female, age 94, left hemisphere 54.5
2846 Female, age 79, unknown 50.2
1781 Male, age 74, unknown 44.7
2290 Female, age 72, unknown 44.6
2288 Male, age 75, left hemisphere 41.1
1854 Male, age 80, left hemisphere 40.2
1857 Female, age 85, left hemisphere 39.9
2289 Male, age 61, right hemisphere 34.9
Globus pallidus, externus
nTPM: 43.5
2395 Male, age 75, both hemispheres 51.4
2772 Female, age 79, unknown 45.8
1996 Male, age 80, right hemisphere 40.7
2646 Male, age 61, right hemisphere 39.8
2567 Female, age 72, unknown 39.7
Globus pallidus, internus
nTPM: 45.3
2483 Female, age 94, right hemisphere 58.9
2287 Male, age 75, right hemisphere 54.9
2778 Female, age 91, both hemispheres 42.0
1818 Male, age 74, unknown 40.9
2566 Female, age 72, unknown 40.8
2037 Male, age 80, right hemisphere 40.6
2111 Female, age 85, right hemisphere 39.0
Nucleus accumbens
nTPM: 44.5
2698 Female, age 72, unknown 52.9
2391 Female, age 94, left hemisphere 50.8
1856 Female, age 91, right hemisphere 46.8
1783 Male, age 74, unknown 45.5
2286 Male, age 75, left hemisphere 45.0
1806 Female, age 85, left hemisphere 40.9
2824 Male, age 61, right hemisphere 40.1
2732 Male, age 80, right hemisphere 33.8
Nucleus basalis of Meynert
nTPM: 45.6
2821 Male, age 75, both hemispheres 53.4
2484 Female, age 94, left hemisphere 50.1
2393 Male, age 80, right hemisphere 40.3
2569 Male, age 61, both hemispheres 38.7
Nucleus of the diagonal band
nTPM: 50.3
2775 Male, age 80, right hemisphere 60.4
1812 Female, age 91, both hemispheres 56.4
2195 Female, age 85, both hemispheres 48.8
2029 Male, age 61, right hemisphere 43.1
1979 Male, age 74, unknown 43.0
Putamen
nTPM: 43.7
2482 Female, age 94, left hemisphere 50.4
1829 Male, age 74, unknown 46.0
1937 Female, age 91, right hemisphere 43.3
2466 Female, age 79, unknown 42.8
2647 Male, age 75, left hemisphere 42.6
1838 Male, age 80, right hemisphere 41.6
2489 Female, age 72, unknown 39.3
Septal nuclei
nTPM: 43.2
2031 Female, age 72, unknown 53.2
1960 Male, age 74, unknown 52.1
2009 Female, age 91, both hemispheres 44.3
2629 Female, age 94, right hemisphere 40.5
2199 Male, age 80, right hemisphere 39.7
2394 Male, age 61, left hemisphere 37.7
2059 Female, age 85, both hemispheres 35.2
Stria terminalis, bed nucleus
nTPM: 45.5
1974 Female, age 91, both hemispheres 53.7
2201 Male, age 74, unknown 44.2
2486 Female, age 94, both hemispheres 38.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.1
Samples: 246

Max nTPM: 51.4
Min nTPM: 15.6
Std nTPM: 4.1
Median nTPM: 22.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 51.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 45.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 39.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 35.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 33.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 32.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 32.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 31.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 30.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 29.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 29.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.6
Samples: 246

Max nTPM: 35.5
Min nTPM: 16.5
Std nTPM: 3.7
Median nTPM: 24.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 35.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 35.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 34.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 34.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 33.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 33.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 32.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 32.8
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 32.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 31.9
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 31.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 23.7
Samples: 205

Max nTPM: 37.0
Min nTPM: 17.5
Std nTPM: 3.2
Median nTPM: 23.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 37.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 34.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 32.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 31.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 31.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 30.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 30.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 30.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 30.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 30.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 29.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 97.2
FF:10164-103B2 76 years, female 97.2
Nucleus accumbens
Scaled Tags Per Million: 105.8
FF:10037-101F1 23-56 years, mixed 105.8
Putamen
Scaled Tags Per Million: 98.1
FF:10176-103C5 60 years, female 98.1
Globus pallidus
Scaled Tags Per Million: 72.5
FF:10161-103A8 76 years, female 81.4
FF:10175-103C4 60 years, female 63.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 54.3
Pig sample Sample description nTPM
Caudate
nTPM: 51.2
Samples: 4

Max nTPM: 58.5
Min nTPM: 45.9
Sample A Female 50.6
Sample B Female 45.9
Sample C Male 58.5
Sample D Male 49.9
Putamen
nTPM: 54.3
Samples: 4

Max nTPM: 67.1
Min nTPM: 45.9
Sample A Female 45.9
Sample B Female 48.7
Sample C Male 67.1
Sample D Male 55.5
Septum
nTPM: 50.3
Samples: 4

Max nTPM: 53.3
Min nTPM: 44.7
Sample A Female 51.3
Sample B Female 44.7
Sample C Male 51.9
Sample D Male 53.3
Ventral pallidum
nTPM: 50.7
Samples: 4

Max nTPM: 52.0
Min nTPM: 48.2
Sample A Female 52.0
Sample B Female 48.2
Sample C Male 51.2
Sample D Male 51.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 72.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 72.8
Samples: 4

Max nTPM: 73.8
Min nTPM: 71.3
Sample A Male 73.8
Sample B Male 72.9
Sample C Female 71.3
Sample D Female 73.1
Septum
nTPM: 59.7
Samples: 4

Max nTPM: 66.0
Min nTPM: 54.9
Sample A Male 54.9
Sample B Male 66.0
Sample C Female 58.8
Sample D Female 59.0
Ventral forebrain
nTPM: 57.3
Samples: 4

Max nTPM: 60.3
Min nTPM: 52.7
Sample A Male 52.7
Sample B Male 57.2
Sample C Female 60.3
Sample D Female 59.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
69015649 Antisense, RP_050315_01_D09, Mouse strain C57BL/6J (56 days, male) 1.4
Pallidum
Expression energy: 1.4
69015649 Antisense, RP_050315_01_D09, Mouse strain C57BL/6J (56 days, male) 1.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org