HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:13.2 nTPM
HPA Brain:53.9 nTPM
GTEx:13.2 nTPM
FANTOM5:63.9 Scaled Tags Per Million
Pig:69.4 nTPM
Mouse:38.3 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041099
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.9
Sample id Sample description nTPM
Hippocampus
nTPM: 38.7
1911 Female, age 85, right hemisphere 57.0
2621 Female, age 67, right hemisphere 40.3
2529 Female, age 94, left hemisphere 38.8
2148 Female, age 91, left hemisphere 33.9
1898 Male, age 80, left hemisphere 33.7
1855 Male, age 76, left hemisphere 28.7
Dentate gyrus
nTPM: 31.7
1927 Female, age 91, both hemispheres 60.5
2246 Female, age 85, both hemispheres 36.3
2528 Male, age 74, both hemispheres 26.5
2531 Female, age 67, both hemispheres 26.3
2010 Male, age 76, both hemispheres 22.7
2530 Female, age 94, left hemisphere 17.9
Entorhinal gyrus
nTPM: 33.2
1938 Female, age 85, left hemisphere 45.6
2613 Female, age 94, left hemisphere 45.6
1787 Male, age 76, left hemisphere 29.4
2764 Male, age 80, right hemisphere 28.9
2686 Male, age 75, right hemisphere 25.2
2117 Female, age 91, right hemisphere 24.8
Hippocampus, CA1
nTPM: 53.6
2749 Male, age 80, left hemisphere 106.2
2527 Male, age 74, both hemispheres 54.6
2082 Female, age 91, right hemisphere 48.2
1873 Female, age 85, both hemispheres 33.5
2045 Male, age 76, both hemispheres 25.7
Hippocampus, CA2
nTPM: 46.1
2113 Female, age 91, right hemisphere 73.5
2249 Male, age 74, both hemispheres 46.7
1963 Male, age 80, left hemisphere 45.8
1892 Male, age 76, both hemispheres 43.6
1940 Female, age 85, left hemisphere 39.0
2437 Female, age 94, left hemisphere 28.1
Hippocampus, CA3
nTPM: 53.9
2137 Male, age 80, left hemisphere 134.3
2436 Male, age 74, both hemispheres 52.1
1867 Male, age 76, both hemispheres 41.9
1891 Female, age 85, both hemispheres 36.7
2620 Female, age 94, left hemisphere 34.6
2861 Female, age 67, both hemispheres 23.9
Parahippocampal cortex
nTPM: 33.4
2245 Female, age 91, both hemispheres 66.8
2250 Female, age 67, right hemisphere 39.8
2018 Male, age 76, both hemispheres 37.5
1990 Female, age 91, right hemisphere 37.4
1850 Male, age 80, both hemispheres 34.5
2693 Female, age 94, both hemispheres 27.7
1933 Female, age 85, both hemispheres 26.4
2532 Female, age 72, left hemisphere 21.7
2692 Male, age 74, both hemispheres 21.6
2622 Female, age 67, right hemisphere 20.7
Perirhinal gyrus
nTPM: 38.9
1847 Female, age 91, left hemisphere 63.3
2521 Female, age 94, right hemisphere 39.1
1794 Male, age 80, right hemisphere 36.2
1841 Female, age 85, right hemisphere 33.3
2848 Male, age 76, right hemisphere 22.6
Subiculum
nTPM: 32.6
1901 Male, age 80, both hemispheres 59.0
1977 Female, age 85, both hemispheres 35.1
2042 Male, age 76, both hemispheres 30.1
2729 Female, age 91, right hemisphere 26.0
2438 Female, age 94, left hemisphere 23.3
2619 Male, age 74, both hemispheres 22.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.2
Samples: 197

Max nTPM: 49.3
Min nTPM: 0.4
Std nTPM: 11.5
Median nTPM: 9.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 49.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 48.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 48.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 47.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 45.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 45.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 43.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 42.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 41.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 38.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 38.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 63.9
FF:10169-103B7 60 years, female 85.1
FF:10153-102I9 76 years, female 42.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 69.4
Pig sample Sample description nTPM
Subiculum
nTPM: 69.4
Samples: 4

Max nTPM: 85.2
Min nTPM: 57.9
Sample A Female 85.2
Sample B Female 69.4
Sample C Male 65.0
Sample D Male 57.9
Dorsal hippocampus
nTPM: 60.5
Samples: 4

Max nTPM: 65.3
Min nTPM: 55.8
Sample A Female 65.3
Sample B Female 62.5
Sample C Male 55.8
Sample D Male 58.3
Entorhinal cortex
nTPM: 40.4
Samples: 4

Max nTPM: 46.8
Min nTPM: 35.3
Sample A Female 36.0
Sample B Female 43.4
Sample C Male 46.8
Sample D Male 35.3
Ventral hippocampus
nTPM: 45.2
Samples: 4

Max nTPM: 54.8
Min nTPM: 36.0
Sample A Female 37.6
Sample B Female 52.3
Sample C Male 36.0
Sample D Male 54.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 38.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.3
Samples: 4

Max nTPM: 43.7
Min nTPM: 34.6
Sample A Male 37.2
Sample B Male 34.6
Sample C Female 37.6
Sample D Female 43.7
Hippocampal formation
nTPM: 34.3
Samples: 4

Max nTPM: 39.5
Min nTPM: 28.9
Sample A Male 39.5
Sample B Male 35.4
Sample C Female 33.3
Sample D Female 28.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
70596234 Antisense, RP_050628_04_F04, Mouse strain C57BL/6J (56 days, male) 3.1
71493867 Antisense, RP_050913_02_H07, Mouse strain C57BL/6J (56 days, male) 0.0

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