HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:61.6 nTPM
HPA Brain:38.8 nTPM
GTEx:61.6 nTPM
FANTOM5:72.3 Scaled Tags Per Million
Pig:63.5 nTPM
Mouse:85.8 nTPM
Allen mouse:6.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039874Antibody CAB014889Antibody CAB026335
Glial cells MediumMediumLow
Neuronal cells HighMediumMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.8
Sample id Sample description nTPM
Hippocampus
nTPM: 38.6
1898 Male, age 80, left hemisphere 46.4
1855 Male, age 76, left hemisphere 41.4
2529 Female, age 94, left hemisphere 38.8
2621 Female, age 67, right hemisphere 38.2
2148 Female, age 91, left hemisphere 34.7
1911 Female, age 85, right hemisphere 32.1
Dentate gyrus
nTPM: 37.1
2530 Female, age 94, left hemisphere 43.7
2010 Male, age 76, both hemispheres 39.9
1927 Female, age 91, both hemispheres 38.1
2246 Female, age 85, both hemispheres 35.6
2528 Male, age 74, both hemispheres 32.8
2531 Female, age 67, both hemispheres 32.3
Entorhinal gyrus
nTPM: 37.4
2117 Female, age 91, right hemisphere 41.4
1938 Female, age 85, left hemisphere 37.8
2764 Male, age 80, right hemisphere 37.8
1787 Male, age 76, left hemisphere 37.6
2686 Male, age 75, right hemisphere 36.5
2613 Female, age 94, left hemisphere 33.2
Hippocampus, CA1
nTPM: 34.6
2527 Male, age 74, both hemispheres 36.9
2749 Male, age 80, left hemisphere 36.7
1873 Female, age 85, both hemispheres 35.5
2082 Female, age 91, right hemisphere 33.6
2045 Male, age 76, both hemispheres 30.4
Hippocampus, CA2
nTPM: 37.8
1892 Male, age 76, both hemispheres 45.3
1963 Male, age 80, left hemisphere 41.8
2437 Female, age 94, left hemisphere 40.5
2249 Male, age 74, both hemispheres 33.2
1940 Female, age 85, left hemisphere 33.0
2113 Female, age 91, right hemisphere 32.8
Hippocampus, CA3
nTPM: 35.7
2436 Male, age 74, both hemispheres 39.6
2861 Female, age 67, both hemispheres 38.3
1867 Male, age 76, both hemispheres 37.3
2137 Male, age 80, left hemisphere 33.7
1891 Female, age 85, both hemispheres 33.2
2620 Female, age 94, left hemisphere 32.3
Parahippocampal cortex
nTPM: 34.6
1850 Male, age 80, both hemispheres 40.3
2532 Female, age 72, left hemisphere 37.6
2692 Male, age 74, both hemispheres 35.7
2245 Female, age 91, both hemispheres 34.5
2622 Female, age 67, right hemisphere 34.2
1990 Female, age 91, right hemisphere 33.7
1933 Female, age 85, both hemispheres 33.6
2250 Female, age 67, right hemisphere 33.4
2018 Male, age 76, both hemispheres 32.3
2693 Female, age 94, both hemispheres 30.8
Perirhinal gyrus
nTPM: 38.8
1794 Male, age 80, right hemisphere 46.6
1847 Female, age 91, left hemisphere 41.9
1841 Female, age 85, right hemisphere 35.6
2521 Female, age 94, right hemisphere 35.3
2848 Male, age 76, right hemisphere 34.7
Subiculum
nTPM: 38.4
2438 Female, age 94, left hemisphere 48.4
1901 Male, age 80, both hemispheres 39.0
2619 Male, age 74, both hemispheres 38.2
1977 Female, age 85, both hemispheres 36.8
2042 Male, age 76, both hemispheres 35.5
2729 Female, age 91, right hemisphere 32.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 61.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 61.6
Samples: 197

Max nTPM: 114.8
Min nTPM: 25.4
Std nTPM: 9.4
Median nTPM: 61.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 114.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 86.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 83.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 83.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 81.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 80.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 79.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 78.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 77.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 77.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 76.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.3
FF:10153-102I9 76 years, female 75.2
FF:10169-103B7 60 years, female 69.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 63.5
Pig sample Sample description nTPM
Subiculum
nTPM: 52.6
Samples: 4

Max nTPM: 68.6
Min nTPM: 46.2
Sample A Female 68.6
Sample B Female 48.0
Sample C Male 47.6
Sample D Male 46.2
Dorsal hippocampus
nTPM: 63.6
Samples: 4

Max nTPM: 77.3
Min nTPM: 51.2
Sample A Female 77.3
Sample B Female 63.3
Sample C Male 62.5
Sample D Male 51.2
Entorhinal cortex
nTPM: 53.3
Samples: 4

Max nTPM: 59.8
Min nTPM: 46.1
Sample A Female 56.4
Sample B Female 59.8
Sample C Male 51.0
Sample D Male 46.1
Ventral hippocampus
nTPM: 59.7
Samples: 4

Max nTPM: 70.4
Min nTPM: 44.4
Sample A Female 61.1
Sample B Female 44.4
Sample C Male 70.4
Sample D Male 62.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 85.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 82.8
Samples: 4

Max nTPM: 87.9
Min nTPM: 78.2
Sample A Male 80.8
Sample B Male 84.4
Sample C Female 87.9
Sample D Female 78.2
Hippocampal formation
nTPM: 85.8
Samples: 4

Max nTPM: 95.0
Min nTPM: 77.5
Sample A Male 95.0
Sample B Male 77.5
Sample C Female 87.5
Sample D Female 83.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.8
69529250 Antisense, RP_050421_03_H01, Mouse strain C57BL/6J (56 days, male) 6.8

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