HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:63.7 nTPM
HPA Brain:16.2 nTPM
GTEx:63.7 nTPM
FANTOM5:142.9 Scaled Tags Per Million
Pig:35.4 nTPM
Mouse:27.3 nTPM
Allen mouse:7.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052059
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.2
Sample id Sample description nTPM
Hippocampus
nTPM: 16.2
1855 Male, age 76, left hemisphere 27.8
2148 Female, age 91, left hemisphere 19.0
2621 Female, age 67, right hemisphere 18.8
2529 Female, age 94, left hemisphere 18.6
1898 Male, age 80, left hemisphere 6.9
1911 Female, age 85, right hemisphere 6.3
Dentate gyrus
nTPM: 10.3
2246 Female, age 85, both hemispheres 18.8
2530 Female, age 94, left hemisphere 14.0
2531 Female, age 67, both hemispheres 10.7
2528 Male, age 74, both hemispheres 7.7
1927 Female, age 91, both hemispheres 5.7
2010 Male, age 76, both hemispheres 4.9
Entorhinal gyrus
nTPM: 12.6
2117 Female, age 91, right hemisphere 24.2
2686 Male, age 75, right hemisphere 19.9
2613 Female, age 94, left hemisphere 12.4
2764 Male, age 80, right hemisphere 8.4
1787 Male, age 76, left hemisphere 6.1
1938 Female, age 85, left hemisphere 4.4
Hippocampus, CA1
nTPM: 10.7
1873 Female, age 85, both hemispheres 20.0
2527 Male, age 74, both hemispheres 13.7
2082 Female, age 91, right hemisphere 9.6
2045 Male, age 76, both hemispheres 5.3
2749 Male, age 80, left hemisphere 5.0
Hippocampus, CA2
nTPM: 7.7
1940 Female, age 85, left hemisphere 12.8
2437 Female, age 94, left hemisphere 9.7
2113 Female, age 91, right hemisphere 8.3
2249 Male, age 74, both hemispheres 8.2
1892 Male, age 76, both hemispheres 5.1
1963 Male, age 80, left hemisphere 2.3
Hippocampus, CA3
nTPM: 10.9
1867 Male, age 76, both hemispheres 28.0
2861 Female, age 67, both hemispheres 13.7
2620 Female, age 94, left hemisphere 7.7
2436 Male, age 74, both hemispheres 6.8
2137 Male, age 80, left hemisphere 4.6
1891 Female, age 85, both hemispheres 4.4
Parahippocampal cortex
nTPM: 11.3
2532 Female, age 72, left hemisphere 15.5
2622 Female, age 67, right hemisphere 14.5
2245 Female, age 91, both hemispheres 12.2
2692 Male, age 74, both hemispheres 11.9
2693 Female, age 94, both hemispheres 11.2
2250 Female, age 67, right hemisphere 11.0
1850 Male, age 80, both hemispheres 10.7
1990 Female, age 91, right hemisphere 10.4
1933 Female, age 85, both hemispheres 9.0
2018 Male, age 76, both hemispheres 6.5
Perirhinal gyrus
nTPM: 7.3
2521 Female, age 94, right hemisphere 9.6
1841 Female, age 85, right hemisphere 9.2
2848 Male, age 76, right hemisphere 6.9
1847 Female, age 91, left hemisphere 6.1
1794 Male, age 80, right hemisphere 4.5
Subiculum
nTPM: 9.4
2438 Female, age 94, left hemisphere 14.1
2619 Male, age 74, both hemispheres 11.6
1977 Female, age 85, both hemispheres 10.1
1901 Male, age 80, both hemispheres 9.6
2729 Female, age 91, right hemisphere 8.0
2042 Male, age 76, both hemispheres 3.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 63.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 63.7
Samples: 197

Max nTPM: 116.3
Min nTPM: 37.8
Std nTPM: 12.5
Median nTPM: 62.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 116.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 100.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 100.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 95.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 94.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 94.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 92.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 90.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 89.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 88.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 87.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 142.9
FF:10153-102I9 76 years, female 156.0
FF:10169-103B7 60 years, female 129.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.4
Pig sample Sample description nTPM
Subiculum
nTPM: 35.4
Samples: 4

Max nTPM: 38.6
Min nTPM: 31.9
Sample A Female 38.6
Sample B Female 36.7
Sample C Male 31.9
Sample D Male 34.3
Dorsal hippocampus
nTPM: 34.6
Samples: 4

Max nTPM: 37.5
Min nTPM: 29.7
Sample A Female 37.5
Sample B Female 29.7
Sample C Male 36.9
Sample D Male 34.2
Entorhinal cortex
nTPM: 33.0
Samples: 4

Max nTPM: 36.6
Min nTPM: 30.8
Sample A Female 32.6
Sample B Female 36.6
Sample C Male 30.8
Sample D Male 31.8
Ventral hippocampus
nTPM: 33.4
Samples: 4

Max nTPM: 39.0
Min nTPM: 29.5
Sample A Female 29.8
Sample B Female 29.5
Sample C Male 39.0
Sample D Male 35.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 27.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.6
Samples: 4

Max nTPM: 26.7
Min nTPM: 20.1
Sample A Male 26.7
Sample B Male 20.1
Sample C Female 25.3
Sample D Female 26.4
Hippocampal formation
nTPM: 27.3
Samples: 4

Max nTPM: 29.2
Min nTPM: 24.2
Sample A Male 24.2
Sample B Male 29.2
Sample C Female 29.1
Sample D Female 26.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.7
69980154 Antisense, RP_050512_04_A03, Mouse strain C57BL/6J (56 days, male) 7.7

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