MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA Brain:11.8 nTPM
GTEx:11.1 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:44.6 nTPM
Mouse:34.5 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.3
2019 Male, age 18, unknown 6.4
1870 Female, age 42, unknown 5.8
2219 Male, age 76, both hemispheres 5.8
2586 Male, age 75, left hemisphere 5.5
1830 Male, age 51, unknown 5.4
1833 Male, age 53, unknown 5.3
2411 Female, age 72, unknown 5.3
2828 Female, age 72, unknown 5.1
1827 Male, age 72, unknown 5.0
2666 Male, age 74, left hemisphere 3.7
Dorsal raphe nucleus
nTPM: 9.2
2016 Female, age 72, unknown 14.1
2298 Female, age 72, unknown 12.0
1828 Male, age 53, unknown 8.8
2047 Male, age 72, unknown 5.9
2750 Male, age 76, both hemispheres 5.1
Inferior colliculus
nTPM: 6.1
2097 Female, age 72, unknown 6.9
1890 Male, age 53, unknown 6.2
2849 Male, age 72, unknown 5.8
1848 Female, age 42, unknown 5.3
Median raphe nucleus
nTPM: 6.6
2220 Male, age 76, midline 6.6
Periaquaductal grey, anterior
nTPM: 7.8
1795 Male, age 51, unknown 8.6
2502 Female, age 75, unknown 8.4
1947 Male, age 18, unknown 6.3
Periaquaductal grey, dorsal
nTPM: 11.0
2850 Male, age 76, both hemispheres 18.0
1840 Male, age 53, unknown 10.3
1831 Male, age 72, unknown 8.7
2464 Female, age 72, unknown 7.2
Periaquaductal grey, lateral
nTPM: 11.8
2140 Male, age 76, both hemispheres 14.0
2272 Male, age 74, both hemispheres 11.6
2053 Male, age 18, unknown 9.6
Pretectal area
nTPM: 7.5
2273 Male, age 74, both hemispheres 14.8
2224 Female, age 72, unknown 10.7
1815 Male, age 53, unknown 7.9
2667 Female, age 75, unknown 7.2
2825 Male, age 18, unknown 7.0
2316 Male, age 76, right hemisphere 6.8
1817 Female, age 42, unknown 6.3
2407 Male, age 75, both hemispheres 6.3
1816 Male, age 51, unknown 5.2
2007 Male, age 72, unknown 5.0
1944 Female, age 72, unknown 4.9
Red nucleus
nTPM: 5.2
2725 Female, age 75, unknown 7.7
1821 Female, age 72, unknown 6.2
1954 Female, age 42, unknown 5.4
1865 Male, age 51, unknown 5.2
1904 Male, age 53, unknown 5.2
2227 Male, age 72, unknown 5.0
2503 Female, age 72, unknown 4.9
2785 Male, age 18, unknown 4.9
2823 Male, age 76, right hemisphere 4.8
2584 Male, age 75, left hemisphere 4.6
2769 Male, age 72, unknown 4.6
2588 Male, age 74, left hemisphere 4.5
Substantia nigra
nTPM: 7.7
2699 Male, age 18, unknown 10.9
2241 Male, age 72, unknown 10.2
1851 Male, age 51, unknown 9.3
1916 Female, age 42, unknown 9.1
2409 Female, age 72, unknown 9.1
1941 Male, age 53, unknown 6.3
2583 Male, age 75, right hemisphere 6.0
2590 Female, age 75, unknown 6.0
1889 Female, age 72, unknown 5.9
2665 Male, age 74, both hemispheres 4.7
Superior colliculus
nTPM: 6.7
1995 Male, age 72, unknown 14.5
1913 Female, age 42, unknown 7.3
2587 Male, age 74, left hemisphere 6.8
1839 Male, age 51, unknown 6.3
2664 Male, age 75, both hemispheres 6.3
2261 Male, age 18, unknown 5.8
1796 Male, age 53, unknown 5.3
1895 Male, age 76, right hemisphere 5.1
2087 Female, age 72, unknown 4.8
2668 Female, age 75, unknown 4.8
Ventral tegmental area
nTPM: 7.3
2021 Male, age 53, unknown 9.0
1915 Female, age 42, unknown 8.1
2218 Male, age 76, both hemispheres 7.2
1942 Male, age 51, unknown 6.9
2410 Female, age 72, unknown 6.7
2223 Female, age 72, unknown 5.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.1
Samples: 139

Max nTPM: 41.3
Min nTPM: 2.6
Std nTPM: 5.5
Median nTPM: 10.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 41.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 37.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 32.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 28.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 26.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 22.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 20.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 18.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 17.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 16.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 16.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.3
FF:10158-103A5 76 years, female 19.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.8
Samples: 4

Max nTPM: 39.6
Min nTPM: 26.0
Sample A Female 39.1
Sample B Female 39.6
Sample C Male 30.3
Sample D Male 26.0
Midbrain
nTPM: 32.7
Samples: 4

Max nTPM: 37.1
Min nTPM: 30.2
Sample A Female 30.4
Sample B Female 37.1
Sample C Male 30.2
Sample D Male 33.1
Periaqueductal gray
nTPM: 36.3
Samples: 3

Max nTPM: 41.2
Min nTPM: 32.6
Sample B Female 32.6
Sample C Male 41.2
Sample D Male 35.2
Superior colliculi
nTPM: 44.6
Samples: 4

Max nTPM: 59.4
Min nTPM: 35.5
Sample A Female 47.3
Sample B Female 59.4
Sample C Male 35.5
Sample D Male 36.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.5
Samples: 4

Max nTPM: 35.9
Min nTPM: 33.7
Sample A Male 35.9
Sample B Male 34.3
Sample C Female 34.0
Sample D Female 33.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
70539159 Antisense, RP_050324_01_B12, Mouse strain C57BL/6J (56 days, male) 3.3
74047839 Antisense, RP_051214_02_A07, Mouse strain C57BL/6J (56 days, male) 0.4

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