MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.5 nTPM
HPA Brain:28.0 nTPM
GTEx:1.5 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:20.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.1
1827 Male, age 72, unknown 27.8
2219 Male, age 76, both hemispheres 24.9
2666 Male, age 74, left hemisphere 24.7
2828 Female, age 72, unknown 22.7
2019 Male, age 18, unknown 18.3
2586 Male, age 75, left hemisphere 18.3
2411 Female, age 72, unknown 14.6
1833 Male, age 53, unknown 14.0
1830 Male, age 51, unknown 13.5
1870 Female, age 42, unknown 11.9
Dorsal raphe nucleus
nTPM: 12.8
2298 Female, age 72, unknown 14.1
1828 Male, age 53, unknown 13.9
2750 Male, age 76, both hemispheres 13.3
2047 Male, age 72, unknown 11.6
2016 Female, age 72, unknown 11.0
Inferior colliculus
nTPM: 19.1
2097 Female, age 72, unknown 22.9
1848 Female, age 42, unknown 20.2
2849 Male, age 72, unknown 19.0
1890 Male, age 53, unknown 14.4
Median raphe nucleus
nTPM: 14.4
2220 Male, age 76, midline 14.4
Periaquaductal grey, anterior
nTPM: 26.9
1795 Male, age 51, unknown 28.5
1947 Male, age 18, unknown 28.0
2502 Female, age 75, unknown 24.3
Periaquaductal grey, dorsal
nTPM: 16.4
1840 Male, age 53, unknown 18.4
1831 Male, age 72, unknown 17.4
2464 Female, age 72, unknown 16.2
2850 Male, age 76, both hemispheres 13.5
Periaquaductal grey, lateral
nTPM: 16.6
2053 Male, age 18, unknown 19.0
2140 Male, age 76, both hemispheres 15.9
2272 Male, age 74, both hemispheres 14.8
Pretectal area
nTPM: 28.0
1816 Male, age 51, unknown 46.5
1944 Female, age 72, unknown 41.4
2007 Male, age 72, unknown 37.9
1817 Female, age 42, unknown 33.9
1815 Male, age 53, unknown 31.9
2667 Female, age 75, unknown 29.2
2407 Male, age 75, both hemispheres 21.5
2825 Male, age 18, unknown 17.3
2316 Male, age 76, right hemisphere 17.2
2224 Female, age 72, unknown 16.3
2273 Male, age 74, both hemispheres 15.2
Red nucleus
nTPM: 14.2
2584 Male, age 75, left hemisphere 18.8
2785 Male, age 18, unknown 18.8
2588 Male, age 74, left hemisphere 17.5
2823 Male, age 76, right hemisphere 15.4
2725 Female, age 75, unknown 14.0
1821 Female, age 72, unknown 12.9
2227 Male, age 72, unknown 12.9
1954 Female, age 42, unknown 12.6
1865 Male, age 51, unknown 12.2
1904 Male, age 53, unknown 12.1
2769 Male, age 72, unknown 11.8
2503 Female, age 72, unknown 11.6
Substantia nigra
nTPM: 23.1
1941 Male, age 53, unknown 35.4
1916 Female, age 42, unknown 30.2
1889 Female, age 72, unknown 29.0
2665 Male, age 74, both hemispheres 25.7
2409 Female, age 72, unknown 23.3
1851 Male, age 51, unknown 22.8
2241 Male, age 72, unknown 18.5
2699 Male, age 18, unknown 16.5
2583 Male, age 75, right hemisphere 15.6
2590 Female, age 75, unknown 14.2
Superior colliculus
nTPM: 24.8
2668 Female, age 75, unknown 36.3
2087 Female, age 72, unknown 33.7
2261 Male, age 18, unknown 30.2
1796 Male, age 53, unknown 29.4
1895 Male, age 76, right hemisphere 27.9
2664 Male, age 75, both hemispheres 18.8
1839 Male, age 51, unknown 18.7
1913 Female, age 42, unknown 18.1
2587 Male, age 74, left hemisphere 17.9
1995 Male, age 72, unknown 16.7
Ventral tegmental area
nTPM: 18.1
2218 Male, age 76, both hemispheres 26.0
1915 Female, age 42, unknown 19.7
2410 Female, age 72, unknown 19.5
1942 Male, age 51, unknown 17.6
2223 Female, age 72, unknown 14.3
2021 Male, age 53, unknown 11.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.5
Samples: 139

Max nTPM: 9.0
Min nTPM: 0.0
Std nTPM: 1.4
Median nTPM: 1.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 9.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 8.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 5.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 5.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 4.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 4.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 4.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 3.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 3.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 3.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.7
FF:10158-103A5 76 years, female 1.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.8
Samples: 4

Max nTPM: 8.8
Min nTPM: 2.2
Sample A Female 8.8
Sample B Female 4.2
Sample C Male 8.0
Sample D Male 2.2
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 35.0
Min nTPM: 4.8
Sample A Female 4.8
Sample B Female 7.5
Sample C Male 35.0
Sample D Male 8.2
Periaqueductal gray
nTPM: 7.1
Samples: 3

Max nTPM: 8.4
Min nTPM: 6.2
Sample B Female 6.8
Sample C Male 8.4
Sample D Male 6.2
Superior colliculi
nTPM: 16.5
Samples: 4

Max nTPM: 28.8
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 15.4
Sample C Male 28.8
Sample D Male 13.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.2
Samples: 4

Max nTPM: 24.7
Min nTPM: 15.2
Sample A Male 15.2
Sample B Male 21.7
Sample C Female 24.7
Sample D Female 19.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
74882685 Antisense, RP_060315_04_G01, Mouse strain C57BL/6J (56 days, male) 1.0
69782168 Antisense, RP_050505_02_D11, Mouse strain C57BL/6J (56 days, male) 0.2

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