HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:6.0 nTPM
HPA Brain:14.1 nTPM
GTEx:6.0 nTPM
FANTOM5:49.6 Scaled Tags Per Million
Pig:26.0 nTPM
Mouse:11.6 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005560Antibody HPA024045
Glial cells MediumNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Hippocampus
nTPM: 9.5
1898 Male, age 80, left hemisphere 13.3
1855 Male, age 76, left hemisphere 10.4
1911 Female, age 85, right hemisphere 9.1
2529 Female, age 94, left hemisphere 8.9
2621 Female, age 67, right hemisphere 8.5
2148 Female, age 91, left hemisphere 6.9
Dentate gyrus
nTPM: 9.3
2528 Male, age 74, both hemispheres 11.2
2246 Female, age 85, both hemispheres 10.7
2531 Female, age 67, both hemispheres 10.5
1927 Female, age 91, both hemispheres 8.9
2010 Male, age 76, both hemispheres 7.4
2530 Female, age 94, left hemisphere 7.1
Entorhinal gyrus
nTPM: 11.0
1938 Female, age 85, left hemisphere 15.6
1787 Male, age 76, left hemisphere 12.0
2613 Female, age 94, left hemisphere 11.4
2764 Male, age 80, right hemisphere 10.8
2117 Female, age 91, right hemisphere 8.8
2686 Male, age 75, right hemisphere 7.1
Hippocampus, CA1
nTPM: 9.1
2045 Male, age 76, both hemispheres 10.7
1873 Female, age 85, both hemispheres 10.6
2082 Female, age 91, right hemisphere 8.8
2749 Male, age 80, left hemisphere 8.0
2527 Male, age 74, both hemispheres 7.2
Hippocampus, CA2
nTPM: 9.6
1892 Male, age 76, both hemispheres 14.2
1940 Female, age 85, left hemisphere 11.0
2113 Female, age 91, right hemisphere 8.7
2437 Female, age 94, left hemisphere 8.7
2249 Male, age 74, both hemispheres 8.1
1963 Male, age 80, left hemisphere 7.2
Hippocampus, CA3
nTPM: 9.9
1867 Male, age 76, both hemispheres 13.5
2620 Female, age 94, left hemisphere 11.6
1891 Female, age 85, both hemispheres 10.9
2861 Female, age 67, both hemispheres 8.9
2436 Male, age 74, both hemispheres 7.6
2137 Male, age 80, left hemisphere 7.1
Parahippocampal cortex
nTPM: 11.3
1850 Male, age 80, both hemispheres 15.2
2250 Female, age 67, right hemisphere 14.0
1933 Female, age 85, both hemispheres 13.7
1990 Female, age 91, right hemisphere 12.7
2693 Female, age 94, both hemispheres 11.2
2018 Male, age 76, both hemispheres 10.9
2532 Female, age 72, left hemisphere 10.8
2245 Female, age 91, both hemispheres 9.5
2622 Female, age 67, right hemisphere 7.4
2692 Male, age 74, both hemispheres 7.4
Perirhinal gyrus
nTPM: 14.1
1841 Female, age 85, right hemisphere 16.2
1847 Female, age 91, left hemisphere 16.1
2521 Female, age 94, right hemisphere 13.0
1794 Male, age 80, right hemisphere 12.8
2848 Male, age 76, right hemisphere 12.5
Subiculum
nTPM: 9.5
1977 Female, age 85, both hemispheres 12.4
1901 Male, age 80, both hemispheres 9.7
2438 Female, age 94, left hemisphere 9.2
2729 Female, age 91, right hemisphere 9.2
2042 Male, age 76, both hemispheres 9.0
2619 Male, age 74, both hemispheres 7.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 6.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.0
Samples: 197

Max nTPM: 15.5
Min nTPM: 2.3
Std nTPM: 2.5
Median nTPM: 5.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 15.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 14.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 13.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 13.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 12.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 12.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 11.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 11.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 11.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 11.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 10.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.6
FF:10153-102I9 76 years, female 51.6
FF:10169-103B7 60 years, female 47.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.0
Pig sample Sample description nTPM
Subiculum
nTPM: 13.8
Samples: 4

Max nTPM: 18.5
Min nTPM: 10.0
Sample A Female 18.5
Sample B Female 12.8
Sample C Male 10.0
Sample D Male 13.7
Dorsal hippocampus
nTPM: 26.0
Samples: 4

Max nTPM: 40.3
Min nTPM: 13.3
Sample A Female 22.0
Sample B Female 28.5
Sample C Male 13.3
Sample D Male 40.3
Entorhinal cortex
nTPM: 9.2
Samples: 4

Max nTPM: 11.4
Min nTPM: 5.9
Sample A Female 10.1
Sample B Female 11.4
Sample C Male 9.5
Sample D Male 5.9
Ventral hippocampus
nTPM: 15.6
Samples: 4

Max nTPM: 21.8
Min nTPM: 12.6
Sample A Female 12.6
Sample B Female 21.8
Sample C Male 14.2
Sample D Male 13.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 11.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.8
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.3
Sample A Male 9.3
Sample B Male 9.4
Sample C Female 11.1
Sample D Female 9.3
Hippocampal formation
nTPM: 11.6
Samples: 4

Max nTPM: 14.2
Min nTPM: 9.0
Sample A Male 14.2
Sample B Male 12.5
Sample C Female 9.0
Sample D Female 10.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
512776 Antisense, RP_040809_02_E04, Mouse strain C57BL/6J (56 days, male) 0.7

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