HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:118.5 nTPM
HPA Brain:75.3 nTPM
GTEx:118.5 nTPM
FANTOM5:42.5 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:47.6 nTPM
Allen mouse:7.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041708Antibody HPA046765
Glial cells Not detectedMedium
Neuronal cells MediumHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 75.3
Sample id Sample description nTPM
Hippocampus
nTPM: 74.1
2621 Female, age 67, right hemisphere 81.7
1898 Male, age 80, left hemisphere 78.0
2529 Female, age 94, left hemisphere 77.7
1855 Male, age 76, left hemisphere 73.1
1911 Female, age 85, right hemisphere 67.5
2148 Female, age 91, left hemisphere 66.8
Dentate gyrus
nTPM: 69.4
2530 Female, age 94, left hemisphere 87.3
2010 Male, age 76, both hemispheres 74.8
2246 Female, age 85, both hemispheres 67.6
1927 Female, age 91, both hemispheres 67.3
2531 Female, age 67, both hemispheres 63.1
2528 Male, age 74, both hemispheres 56.5
Entorhinal gyrus
nTPM: 75.3
1938 Female, age 85, left hemisphere 79.7
2686 Male, age 75, right hemisphere 78.4
2764 Male, age 80, right hemisphere 77.0
1787 Male, age 76, left hemisphere 75.5
2613 Female, age 94, left hemisphere 72.3
2117 Female, age 91, right hemisphere 68.5
Hippocampus, CA1
nTPM: 72.5
2749 Male, age 80, left hemisphere 94.0
2527 Male, age 74, both hemispheres 71.5
1873 Female, age 85, both hemispheres 71.0
2045 Male, age 76, both hemispheres 64.4
2082 Female, age 91, right hemisphere 61.6
Hippocampus, CA2
nTPM: 70.8
1892 Male, age 76, both hemispheres 81.9
1963 Male, age 80, left hemisphere 74.0
2437 Female, age 94, left hemisphere 72.4
1940 Female, age 85, left hemisphere 69.9
2249 Male, age 74, both hemispheres 65.2
2113 Female, age 91, right hemisphere 61.4
Hippocampus, CA3
nTPM: 70.4
2861 Female, age 67, both hemispheres 80.6
2137 Male, age 80, left hemisphere 75.4
1867 Male, age 76, both hemispheres 74.6
2620 Female, age 94, left hemisphere 67.4
2436 Male, age 74, both hemispheres 63.6
1891 Female, age 85, both hemispheres 61.0
Parahippocampal cortex
nTPM: 72.7
2245 Female, age 91, both hemispheres 88.7
2532 Female, age 72, left hemisphere 81.1
2622 Female, age 67, right hemisphere 79.7
1850 Male, age 80, both hemispheres 74.2
2692 Male, age 74, both hemispheres 73.2
1933 Female, age 85, both hemispheres 71.5
2250 Female, age 67, right hemisphere 69.6
1990 Female, age 91, right hemisphere 66.3
2018 Male, age 76, both hemispheres 65.6
2693 Female, age 94, both hemispheres 56.8
Perirhinal gyrus
nTPM: 73.3
1794 Male, age 80, right hemisphere 80.5
1841 Female, age 85, right hemisphere 77.1
1847 Female, age 91, left hemisphere 72.2
2848 Male, age 76, right hemisphere 69.9
2521 Female, age 94, right hemisphere 66.8
Subiculum
nTPM: 72.0
2042 Male, age 76, both hemispheres 78.6
2438 Female, age 94, left hemisphere 78.0
1901 Male, age 80, both hemispheres 76.9
2619 Male, age 74, both hemispheres 73.9
1977 Female, age 85, both hemispheres 72.0
2729 Female, age 91, right hemisphere 52.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 118.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 118.5
Samples: 197

Max nTPM: 244.0
Min nTPM: 40.3
Std nTPM: 33.6
Median nTPM: 113.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 244.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 237.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 218.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 215.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 209.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 207.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 197.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 194.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 191.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 190.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 184.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 42.5
FF:10169-103B7 60 years, female 50.8
FF:10153-102I9 76 years, female 34.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.0
Pig sample Sample description nTPM
Subiculum
nTPM: 14.8
Samples: 4

Max nTPM: 22.0
Min nTPM: 11.1
Sample A Female 22.0
Sample B Female 12.4
Sample C Male 13.8
Sample D Male 11.1
Dorsal hippocampus
nTPM: 15.4
Samples: 4

Max nTPM: 19.3
Min nTPM: 10.7
Sample A Female 19.3
Sample B Female 13.8
Sample C Male 17.9
Sample D Male 10.7
Entorhinal cortex
nTPM: 16.0
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 18.6
Sample C Male 16.2
Sample D Male 15.4
Ventral hippocampus
nTPM: 15.0
Samples: 4

Max nTPM: 18.1
Min nTPM: 10.9
Sample A Female 15.8
Sample B Female 10.9
Sample C Male 18.1
Sample D Male 15.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 47.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 47.6
Samples: 4

Max nTPM: 57.7
Min nTPM: 39.8
Sample A Male 49.3
Sample B Male 57.7
Sample C Female 43.6
Sample D Female 39.8
Hippocampal formation
nTPM: 45.3
Samples: 4

Max nTPM: 53.2
Min nTPM: 39.3
Sample A Male 42.9
Sample B Male 45.9
Sample C Female 39.3
Sample D Female 53.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.0
69174040 Antisense, RP_050329_01_H12, Mouse strain C57BL/6J (56 days, male) 7.0

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