MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:119.9 nTPM
HPA Brain:76.5 nTPM
GTEx:119.9 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:20.4 nTPM
Mouse:24.0 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 76.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.9
2586 Male, age 75, left hemisphere 90.7
1827 Male, age 72, unknown 80.6
2666 Male, age 74, left hemisphere 75.8
2828 Female, age 72, unknown 71.4
1870 Female, age 42, unknown 71.3
2219 Male, age 76, both hemispheres 70.0
1833 Male, age 53, unknown 67.3
1830 Male, age 51, unknown 65.8
2019 Male, age 18, unknown 65.4
2411 Female, age 72, unknown 60.3
Dorsal raphe nucleus
nTPM: 65.8
1828 Male, age 53, unknown 70.7
2750 Male, age 76, both hemispheres 70.4
2047 Male, age 72, unknown 69.2
2298 Female, age 72, unknown 61.3
2016 Female, age 72, unknown 57.6
Inferior colliculus
nTPM: 68.2
2849 Male, age 72, unknown 77.5
1848 Female, age 42, unknown 68.9
1890 Male, age 53, unknown 65.3
2097 Female, age 72, unknown 61.0
Median raphe nucleus
nTPM: 72.8
2220 Male, age 76, midline 72.8
Periaquaductal grey, anterior
nTPM: 74.6
1947 Male, age 18, unknown 76.0
1795 Male, age 51, unknown 74.9
2502 Female, age 75, unknown 72.9
Periaquaductal grey, dorsal
nTPM: 60.8
2850 Male, age 76, both hemispheres 65.5
1831 Male, age 72, unknown 61.8
1840 Male, age 53, unknown 60.1
2464 Female, age 72, unknown 55.7
Periaquaductal grey, lateral
nTPM: 60.9
2272 Male, age 74, both hemispheres 64.7
2053 Male, age 18, unknown 60.0
2140 Male, age 76, both hemispheres 58.0
Pretectal area
nTPM: 74.3
2007 Male, age 72, unknown 87.3
1816 Male, age 51, unknown 85.3
1817 Female, age 42, unknown 82.1
1944 Female, age 72, unknown 81.3
1815 Male, age 53, unknown 78.7
2667 Female, age 75, unknown 76.4
2407 Male, age 75, both hemispheres 74.9
2825 Male, age 18, unknown 69.8
2224 Female, age 72, unknown 65.0
2273 Male, age 74, both hemispheres 59.7
2316 Male, age 76, right hemisphere 56.3
Red nucleus
nTPM: 76.5
2588 Male, age 74, left hemisphere 83.3
2725 Female, age 75, unknown 81.1
1821 Female, age 72, unknown 79.0
2503 Female, age 72, unknown 77.9
2227 Male, age 72, unknown 76.4
2785 Male, age 18, unknown 76.2
1954 Female, age 42, unknown 75.9
2584 Male, age 75, left hemisphere 75.7
1865 Male, age 51, unknown 75.0
2823 Male, age 76, right hemisphere 74.1
2769 Male, age 72, unknown 72.4
1904 Male, age 53, unknown 71.1
Substantia nigra
nTPM: 76.5
1916 Female, age 42, unknown 99.0
1941 Male, age 53, unknown 86.0
2699 Male, age 18, unknown 85.4
2665 Male, age 74, both hemispheres 81.6
1889 Female, age 72, unknown 80.9
1851 Male, age 51, unknown 79.2
2409 Female, age 72, unknown 70.4
2583 Male, age 75, right hemisphere 69.9
2590 Female, age 75, unknown 59.8
2241 Male, age 72, unknown 52.7
Superior colliculus
nTPM: 71.5
2668 Female, age 75, unknown 83.3
2664 Male, age 75, both hemispheres 76.6
1796 Male, age 53, unknown 75.3
2587 Male, age 74, left hemisphere 74.7
2261 Male, age 18, unknown 72.3
2087 Female, age 72, unknown 69.0
1895 Male, age 76, right hemisphere 67.6
1839 Male, age 51, unknown 67.1
1995 Male, age 72, unknown 65.5
1913 Female, age 42, unknown 63.3
Ventral tegmental area
nTPM: 70.3
1915 Female, age 42, unknown 81.0
2218 Male, age 76, both hemispheres 77.1
2223 Female, age 72, unknown 71.7
1942 Male, age 51, unknown 67.1
2410 Female, age 72, unknown 64.5
2021 Male, age 53, unknown 60.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 119.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.9
Samples: 139

Max nTPM: 209.8
Min nTPM: 46.5
Std nTPM: 26.4
Median nTPM: 115.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 209.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 207.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 199.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 187.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 179.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 169.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 167.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 158.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 157.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 156.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 154.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.5
Samples: 4

Max nTPM: 25.9
Min nTPM: 13.9
Sample A Female 25.9
Sample B Female 15.4
Sample C Male 22.6
Sample D Male 13.9
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 22.7
Min nTPM: 18.4
Sample A Female 22.7
Sample B Female 20.8
Sample C Male 19.8
Sample D Male 18.4
Periaqueductal gray
nTPM: 17.9
Samples: 3

Max nTPM: 21.5
Min nTPM: 14.8
Sample B Female 17.5
Sample C Male 21.5
Sample D Male 14.8
Superior colliculi
nTPM: 20.3
Samples: 4

Max nTPM: 23.9
Min nTPM: 14.9
Sample A Female 23.9
Sample B Female 14.9
Sample C Male 21.9
Sample D Male 20.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 29.7
Min nTPM: 21.1
Sample A Male 29.7
Sample B Male 21.9
Sample C Female 21.1
Sample D Female 23.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
69174040 Antisense, RP_050329_01_H12, Mouse strain C57BL/6J (56 days, male) 6.9

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