MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.1 nTPM
HPA Brain:168.0 nTPM
GTEx:53.1 nTPM
FANTOM5:283.0 Scaled Tags Per Million
Pig:53.9 nTPM
Mouse:25.4 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 168.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 150.6
2586 Male, age 75, left hemisphere 215.0
1830 Male, age 51, unknown 162.6
1870 Female, age 42, unknown 152.8
2828 Female, age 72, unknown 152.1
1827 Male, age 72, unknown 150.4
1833 Male, age 53, unknown 148.0
2666 Male, age 74, left hemisphere 143.8
2411 Female, age 72, unknown 138.2
2219 Male, age 76, both hemispheres 127.5
2019 Male, age 18, unknown 115.9
Dorsal raphe nucleus
nTPM: 95.0
2750 Male, age 76, both hemispheres 147.5
2047 Male, age 72, unknown 90.7
1828 Male, age 53, unknown 82.7
2016 Female, age 72, unknown 78.2
2298 Female, age 72, unknown 76.0
Inferior colliculus
nTPM: 116.3
1890 Male, age 53, unknown 123.5
2097 Female, age 72, unknown 120.7
2849 Male, age 72, unknown 111.4
1848 Female, age 42, unknown 109.8
Median raphe nucleus
nTPM: 84.8
2220 Male, age 76, midline 84.8
Periaquaductal grey, anterior
nTPM: 143.3
1947 Male, age 18, unknown 215.1
1795 Male, age 51, unknown 116.8
2502 Female, age 75, unknown 97.9
Periaquaductal grey, dorsal
nTPM: 77.6
2464 Female, age 72, unknown 92.7
1831 Male, age 72, unknown 81.6
1840 Male, age 53, unknown 72.8
2850 Male, age 76, both hemispheres 63.2
Periaquaductal grey, lateral
nTPM: 86.1
2053 Male, age 18, unknown 109.7
2272 Male, age 74, both hemispheres 90.4
2140 Male, age 76, both hemispheres 58.2
Pretectal area
nTPM: 99.9
2407 Male, age 75, both hemispheres 164.0
1815 Male, age 53, unknown 126.5
2825 Male, age 18, unknown 125.9
1817 Female, age 42, unknown 101.8
2667 Female, age 75, unknown 99.5
2007 Male, age 72, unknown 93.9
2316 Male, age 76, right hemisphere 88.2
1816 Male, age 51, unknown 84.8
2273 Male, age 74, both hemispheres 80.8
1944 Female, age 72, unknown 68.8
2224 Female, age 72, unknown 64.5
Red nucleus
nTPM: 168.0
2584 Male, age 75, left hemisphere 230.9
1865 Male, age 51, unknown 199.1
2588 Male, age 74, left hemisphere 194.3
1904 Male, age 53, unknown 193.9
2823 Male, age 76, right hemisphere 176.2
2227 Male, age 72, unknown 166.0
2769 Male, age 72, unknown 165.7
1954 Female, age 42, unknown 155.8
2503 Female, age 72, unknown 152.9
1821 Female, age 72, unknown 132.9
2785 Male, age 18, unknown 125.3
2725 Female, age 75, unknown 122.5
Substantia nigra
nTPM: 108.9
2583 Male, age 75, right hemisphere 221.6
2590 Female, age 75, unknown 173.1
1851 Male, age 51, unknown 106.0
2409 Female, age 72, unknown 102.6
2665 Male, age 74, both hemispheres 99.1
1889 Female, age 72, unknown 97.3
2241 Male, age 72, unknown 83.8
1941 Male, age 53, unknown 76.6
1916 Female, age 42, unknown 64.8
2699 Male, age 18, unknown 63.8
Superior colliculus
nTPM: 129.6
1913 Female, age 42, unknown 158.1
1995 Male, age 72, unknown 153.3
1796 Male, age 53, unknown 150.5
2664 Male, age 75, both hemispheres 141.9
2668 Female, age 75, unknown 133.4
2261 Male, age 18, unknown 123.9
2587 Male, age 74, left hemisphere 123.4
1839 Male, age 51, unknown 122.0
1895 Male, age 76, right hemisphere 109.5
2087 Female, age 72, unknown 79.7
Ventral tegmental area
nTPM: 116.4
2223 Female, age 72, unknown 196.1
2410 Female, age 72, unknown 118.9
1942 Male, age 51, unknown 110.4
2218 Male, age 76, both hemispheres 92.2
1915 Female, age 42, unknown 91.5
2021 Male, age 53, unknown 89.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.1
Samples: 139

Max nTPM: 131.4
Min nTPM: 14.7
Std nTPM: 24.9
Median nTPM: 46.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 131.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 127.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 125.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 122.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 118.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 106.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 105.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 102.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 98.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 94.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 94.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 283.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 283.0
FF:10158-103A5 76 years, female 283.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.4
Samples: 4

Max nTPM: 69.4
Min nTPM: 38.3
Sample A Female 43.2
Sample B Female 38.3
Sample C Male 38.7
Sample D Male 69.4
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 69.0
Min nTPM: 29.0
Sample A Female 69.0
Sample B Female 29.0
Sample C Male 51.7
Sample D Male 65.9
Periaqueductal gray
nTPM: 27.2
Samples: 3

Max nTPM: 30.0
Min nTPM: 24.5
Sample B Female 24.5
Sample C Male 27.0
Sample D Male 30.0
Superior colliculi
nTPM: 37.9
Samples: 4

Max nTPM: 51.3
Min nTPM: 19.7
Sample A Female 44.3
Sample B Female 19.7
Sample C Male 36.2
Sample D Male 51.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.4
Samples: 4

Max nTPM: 27.4
Min nTPM: 24.7
Sample A Male 24.9
Sample B Male 24.7
Sample C Female 27.4
Sample D Female 24.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
69672808 Antisense, RP_050428_04_E06, Mouse strain C57BL/6J (56 days, male) 4.9
73992909 Antisense, RP_051214_01_F03, Mouse strain C57BL/6J (56 days, male) 3.8

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