BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.0 nTPM
HPA Brain:43.8 nTPM
GTEx:24.0 nTPM
FANTOM5:56.7 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:42.9 nTPM
Allen mouse:0.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.4
1781 Male, age 74, unknown 41.7
2290 Female, age 72, unknown 34.5
2846 Female, age 79, unknown 34.1
1857 Female, age 85, left hemisphere 34.0
2289 Male, age 61, right hemisphere 33.7
1854 Male, age 80, left hemisphere 33.6
2288 Male, age 75, left hemisphere 30.6
2481 Female, age 94, left hemisphere 25.0
Globus pallidus, externus
nTPM: 32.3
2646 Male, age 61, right hemisphere 38.6
1996 Male, age 80, right hemisphere 32.7
2772 Female, age 79, unknown 32.3
2395 Male, age 75, both hemispheres 30.6
2567 Female, age 72, unknown 27.4
Globus pallidus, internus
nTPM: 33.0
2566 Female, age 72, unknown 37.7
2778 Female, age 91, both hemispheres 34.1
2483 Female, age 94, right hemisphere 34.0
2037 Male, age 80, right hemisphere 32.7
2111 Female, age 85, right hemisphere 32.6
1818 Male, age 74, unknown 30.5
2287 Male, age 75, right hemisphere 29.4
Nucleus accumbens
nTPM: 34.4
1783 Male, age 74, unknown 43.0
1856 Female, age 91, right hemisphere 36.1
1806 Female, age 85, left hemisphere 35.4
2824 Male, age 61, right hemisphere 33.6
2698 Female, age 72, unknown 33.5
2391 Female, age 94, left hemisphere 32.4
2732 Male, age 80, right hemisphere 31.4
2286 Male, age 75, left hemisphere 30.0
Nucleus basalis of Meynert
nTPM: 33.7
2569 Male, age 61, both hemispheres 39.3
2821 Male, age 75, both hemispheres 32.8
2484 Female, age 94, left hemisphere 32.3
2393 Male, age 80, right hemisphere 30.5
Nucleus of the diagonal band
nTPM: 43.8
2775 Male, age 80, right hemisphere 48.7
2029 Male, age 61, right hemisphere 47.3
2195 Female, age 85, both hemispheres 47.2
1812 Female, age 91, both hemispheres 43.4
1979 Male, age 74, unknown 32.3
Putamen
nTPM: 35.1
2647 Male, age 75, left hemisphere 42.2
2489 Female, age 72, unknown 35.7
1838 Male, age 80, right hemisphere 35.5
2466 Female, age 79, unknown 35.0
1829 Male, age 74, unknown 34.0
1937 Female, age 91, right hemisphere 32.7
2482 Female, age 94, left hemisphere 30.6
Septal nuclei
nTPM: 43.2
1960 Male, age 74, unknown 56.6
2031 Female, age 72, unknown 49.6
2059 Female, age 85, both hemispheres 42.5
2009 Female, age 91, both hemispheres 42.2
2629 Female, age 94, right hemisphere 39.4
2394 Male, age 61, left hemisphere 39.2
2199 Male, age 80, right hemisphere 32.7
Stria terminalis, bed nucleus
nTPM: 41.8
1974 Female, age 91, both hemispheres 44.5
2486 Female, age 94, both hemispheres 43.9
2201 Male, age 74, unknown 36.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.5
Samples: 246

Max nTPM: 36.5
Min nTPM: 13.4
Std nTPM: 3.6
Median nTPM: 22.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 36.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 33.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 31.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 30.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 29.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 29.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 29.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 29.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 28.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 28.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 28.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.0
Samples: 246

Max nTPM: 38.1
Min nTPM: 11.5
Std nTPM: 4.3
Median nTPM: 24.1
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 38.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 37.9
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 36.1
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 35.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 34.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 33.3
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 32.2
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 31.7
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 31.6
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 31.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 31.2
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Brain - Putamen (basal ganglia)
Average nTPM: 22.6
Samples: 205

Max nTPM: 35.8
Min nTPM: 12.9
Std nTPM: 4.1
Median nTPM: 22.7
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 35.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 33.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 33.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 32.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 31.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 30.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 29.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 29.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 29.6
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 29.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 28.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 56.7
FF:10164-103B2 76 years, female 56.7
Nucleus accumbens
Scaled Tags Per Million: 50.6
FF:10037-101F1 23-56 years, mixed 50.6
Putamen
Scaled Tags Per Million: 47.3
FF:10176-103C5 60 years, female 47.3
Globus pallidus
Scaled Tags Per Million: 34.2
FF:10161-103A8 76 years, female 43.4
FF:10175-103C4 60 years, female 25.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.2
Pig sample Sample description nTPM
Caudate
nTPM: 24.2
Samples: 4

Max nTPM: 28.0
Min nTPM: 22.1
Sample A Female 22.1
Sample B Female 23.7
Sample C Male 28.0
Sample D Male 22.8
Putamen
nTPM: 22.2
Samples: 4

Max nTPM: 25.4
Min nTPM: 17.8
Sample A Female 20.3
Sample B Female 17.8
Sample C Male 25.3
Sample D Male 25.4
Septum
nTPM: 19.9
Samples: 4

Max nTPM: 21.2
Min nTPM: 17.6
Sample A Female 21.2
Sample B Female 17.6
Sample C Male 20.1
Sample D Male 20.5
Ventral pallidum
nTPM: 21.9
Samples: 4

Max nTPM: 25.4
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 20.7
Sample C Male 25.4
Sample D Male 21.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.1
Samples: 4

Max nTPM: 44.2
Min nTPM: 40.2
Sample A Male 44.2
Sample B Male 41.7
Sample C Female 40.2
Sample D Female 42.4
Septum
nTPM: 35.0
Samples: 4

Max nTPM: 38.3
Min nTPM: 33.3
Sample A Male 38.3
Sample B Male 33.3
Sample C Female 34.9
Sample D Female 33.4
Ventral forebrain
nTPM: 42.9
Samples: 4

Max nTPM: 47.6
Min nTPM: 37.8
Sample A Male 47.6
Sample B Male 41.2
Sample C Female 37.8
Sample D Female 44.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
2675 Antisense, RP_040526_02_B06, Mouse strain C57BL/6J (56 days, male) 0.9
2676 Antisense, RP_040526_02_B06, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.6
2675 Antisense, RP_040526_02_B06, Mouse strain C57BL/6J (56 days, male) 0.6
2676 Antisense, RP_040526_02_B06, Mouse strain C57BL/6J (56 days, male) 0.0

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