MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.8 nTPM
HPA Brain:48.3 nTPM
GTEx:14.8 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:59.0 nTPM
Mouse:20.5 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.9
2586 Male, age 75, left hemisphere 81.5
2666 Male, age 74, left hemisphere 63.3
2019 Male, age 18, unknown 53.0
2828 Female, age 72, unknown 50.5
1827 Male, age 72, unknown 39.8
1833 Male, age 53, unknown 35.2
1830 Male, age 51, unknown 31.6
2219 Male, age 76, both hemispheres 29.2
1870 Female, age 42, unknown 27.6
2411 Female, age 72, unknown 27.6
Dorsal raphe nucleus
nTPM: 31.1
1828 Male, age 53, unknown 38.4
2047 Male, age 72, unknown 33.2
2298 Female, age 72, unknown 31.6
2016 Female, age 72, unknown 29.2
2750 Male, age 76, both hemispheres 23.4
Inferior colliculus
nTPM: 41.2
1848 Female, age 42, unknown 43.8
1890 Male, age 53, unknown 41.9
2849 Male, age 72, unknown 40.0
2097 Female, age 72, unknown 39.2
Median raphe nucleus
nTPM: 27.0
2220 Male, age 76, midline 27.0
Periaquaductal grey, anterior
nTPM: 37.1
1795 Male, age 51, unknown 42.5
2502 Female, age 75, unknown 36.6
1947 Male, age 18, unknown 32.0
Periaquaductal grey, dorsal
nTPM: 34.5
1840 Male, age 53, unknown 37.8
1831 Male, age 72, unknown 37.7
2464 Female, age 72, unknown 36.1
2850 Male, age 76, both hemispheres 26.3
Periaquaductal grey, lateral
nTPM: 32.7
2053 Male, age 18, unknown 37.3
2140 Male, age 76, both hemispheres 32.3
2272 Male, age 74, both hemispheres 28.5
Pretectal area
nTPM: 48.3
1817 Female, age 42, unknown 73.0
2007 Male, age 72, unknown 70.7
1816 Male, age 51, unknown 70.3
1944 Female, age 72, unknown 66.6
1815 Male, age 53, unknown 56.7
2667 Female, age 75, unknown 38.6
2407 Male, age 75, both hemispheres 37.9
2316 Male, age 76, right hemisphere 33.8
2825 Male, age 18, unknown 32.2
2273 Male, age 74, both hemispheres 26.4
2224 Female, age 72, unknown 24.9
Red nucleus
nTPM: 44.1
2584 Male, age 75, left hemisphere 60.6
2588 Male, age 74, left hemisphere 59.2
2785 Male, age 18, unknown 54.5
2725 Female, age 75, unknown 47.2
2823 Male, age 76, right hemisphere 46.3
1954 Female, age 42, unknown 42.1
1865 Male, age 51, unknown 38.3
2769 Male, age 72, unknown 37.5
1904 Male, age 53, unknown 37.4
2503 Female, age 72, unknown 36.7
2227 Male, age 72, unknown 35.7
1821 Female, age 72, unknown 33.4
Substantia nigra
nTPM: 38.8
2665 Male, age 74, both hemispheres 52.3
1889 Female, age 72, unknown 50.6
2583 Male, age 75, right hemisphere 50.3
2590 Female, age 75, unknown 40.4
1916 Female, age 42, unknown 37.9
2409 Female, age 72, unknown 35.0
1851 Male, age 51, unknown 34.7
1941 Male, age 53, unknown 31.7
2699 Male, age 18, unknown 27.7
2241 Male, age 72, unknown 27.5
Superior colliculus
nTPM: 44.0
2087 Female, age 72, unknown 56.3
2664 Male, age 75, both hemispheres 54.6
2261 Male, age 18, unknown 50.7
1995 Male, age 72, unknown 46.9
1796 Male, age 53, unknown 45.7
2668 Female, age 75, unknown 43.3
1913 Female, age 42, unknown 38.1
1839 Male, age 51, unknown 37.1
2587 Male, age 74, left hemisphere 35.5
1895 Male, age 76, right hemisphere 32.3
Ventral tegmental area
nTPM: 31.4
2223 Female, age 72, unknown 35.9
2410 Female, age 72, unknown 35.0
1942 Male, age 51, unknown 32.1
1915 Female, age 42, unknown 30.0
2218 Male, age 76, both hemispheres 28.6
2021 Male, age 53, unknown 26.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.8
Samples: 139

Max nTPM: 33.2
Min nTPM: 4.9
Std nTPM: 5.5
Median nTPM: 14.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 33.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 29.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 28.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 28.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 27.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 26.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 25.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 25.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 25.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 23.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.8
FF:10158-103A5 76 years, female 27.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.6
Samples: 4

Max nTPM: 36.6
Min nTPM: 20.5
Sample A Female 24.2
Sample B Female 36.6
Sample C Male 20.5
Sample D Male 21.0
Midbrain
nTPM: 35.8
Samples: 4

Max nTPM: 52.1
Min nTPM: 18.7
Sample A Female 21.5
Sample B Female 18.7
Sample C Male 52.1
Sample D Male 50.8
Periaqueductal gray
nTPM: 16.6
Samples: 3

Max nTPM: 17.2
Min nTPM: 16.3
Sample B Female 16.4
Sample C Male 17.2
Sample D Male 16.3
Superior colliculi
nTPM: 59.1
Samples: 4

Max nTPM: 74.3
Min nTPM: 42.6
Sample A Female 73.0
Sample B Female 74.3
Sample C Male 42.6
Sample D Male 46.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 22.3
Min nTPM: 19.4
Sample A Male 19.4
Sample B Male 20.2
Sample C Female 22.3
Sample D Female 20.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
68193036 Antisense, RP_040825_01_G07, Mouse strain C57BL/6J (56 days, male) 3.3

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