MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:116.7 nTPM
HPA Brain:438.3 nTPM
GTEx:116.7 nTPM
FANTOM5:156.9 Scaled Tags Per Million
Pig:119.0 nTPM
Mouse:209.3 nTPM
Allen mouse:9.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 438.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 361.9
2586 Male, age 75, left hemisphere 566.2
2666 Male, age 74, left hemisphere 465.8
1827 Male, age 72, unknown 388.6
2219 Male, age 76, both hemispheres 375.2
2828 Female, age 72, unknown 346.2
2411 Female, age 72, unknown 314.8
1870 Female, age 42, unknown 313.3
1833 Male, age 53, unknown 309.1
1830 Male, age 51, unknown 272.2
2019 Male, age 18, unknown 267.9
Dorsal raphe nucleus
nTPM: 334.6
2047 Male, age 72, unknown 396.7
2298 Female, age 72, unknown 388.7
1828 Male, age 53, unknown 313.9
2750 Male, age 76, both hemispheres 299.6
2016 Female, age 72, unknown 273.9
Inferior colliculus
nTPM: 371.5
2097 Female, age 72, unknown 395.6
1848 Female, age 42, unknown 395.3
2849 Male, age 72, unknown 376.6
1890 Male, age 53, unknown 318.6
Median raphe nucleus
nTPM: 413.3
2220 Male, age 76, midline 413.3
Periaquaductal grey, anterior
nTPM: 438.3
2502 Female, age 75, unknown 495.5
1795 Male, age 51, unknown 417.9
1947 Male, age 18, unknown 401.4
Periaquaductal grey, dorsal
nTPM: 329.5
1840 Male, age 53, unknown 411.0
2464 Female, age 72, unknown 330.1
1831 Male, age 72, unknown 319.8
2850 Male, age 76, both hemispheres 257.2
Periaquaductal grey, lateral
nTPM: 249.3
2053 Male, age 18, unknown 299.9
2140 Male, age 76, both hemispheres 253.6
2272 Male, age 74, both hemispheres 194.6
Pretectal area
nTPM: 341.3
1816 Male, age 51, unknown 462.3
2007 Male, age 72, unknown 413.3
1944 Female, age 72, unknown 410.9
1817 Female, age 42, unknown 405.1
1815 Male, age 53, unknown 363.5
2224 Female, age 72, unknown 361.0
2825 Male, age 18, unknown 331.7
2407 Male, age 75, both hemispheres 302.1
2667 Female, age 75, unknown 278.1
2316 Male, age 76, right hemisphere 244.4
2273 Male, age 74, both hemispheres 182.4
Red nucleus
nTPM: 253.9
2584 Male, age 75, left hemisphere 370.3
2785 Male, age 18, unknown 288.0
2588 Male, age 74, left hemisphere 277.5
2503 Female, age 72, unknown 274.4
2227 Male, age 72, unknown 255.3
2769 Male, age 72, unknown 254.8
1821 Female, age 72, unknown 250.0
2725 Female, age 75, unknown 245.0
1954 Female, age 42, unknown 222.4
1865 Male, age 51, unknown 209.9
1904 Male, age 53, unknown 209.2
2823 Male, age 76, right hemisphere 189.8
Substantia nigra
nTPM: 372.5
2665 Male, age 74, both hemispheres 499.3
1916 Female, age 42, unknown 446.2
1851 Male, age 51, unknown 418.6
1941 Male, age 53, unknown 395.2
1889 Female, age 72, unknown 383.8
2699 Male, age 18, unknown 345.9
2583 Male, age 75, right hemisphere 339.9
2241 Male, age 72, unknown 327.1
2590 Female, age 75, unknown 294.0
2409 Female, age 72, unknown 274.9
Superior colliculus
nTPM: 357.2
2664 Male, age 75, both hemispheres 499.0
2668 Female, age 75, unknown 462.4
1796 Male, age 53, unknown 435.0
2261 Male, age 18, unknown 373.1
2087 Female, age 72, unknown 370.8
1839 Male, age 51, unknown 344.3
1895 Male, age 76, right hemisphere 328.6
2587 Male, age 74, left hemisphere 286.8
1913 Female, age 42, unknown 245.9
1995 Male, age 72, unknown 226.1
Ventral tegmental area
nTPM: 392.7
2223 Female, age 72, unknown 427.1
2218 Male, age 76, both hemispheres 413.8
1915 Female, age 42, unknown 403.6
1942 Male, age 51, unknown 398.2
2410 Female, age 72, unknown 365.7
2021 Male, age 53, unknown 348.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 116.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 116.7
Samples: 139

Max nTPM: 358.0
Min nTPM: 48.7
Std nTPM: 48.0
Median nTPM: 104.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 358.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 265.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 253.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 223.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 220.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 215.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 212.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 200.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 199.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 195.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 195.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 156.9
FF:10158-103A5 76 years, female 156.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 119.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 101.9
Samples: 4

Max nTPM: 117.6
Min nTPM: 82.6
Sample A Female 111.8
Sample B Female 82.6
Sample C Male 117.6
Sample D Male 95.5
Midbrain
nTPM: 119.0
Samples: 4

Max nTPM: 159.7
Min nTPM: 84.0
Sample A Female 159.7
Sample B Female 84.0
Sample C Male 129.1
Sample D Male 103.3
Periaqueductal gray
nTPM: 88.2
Samples: 3

Max nTPM: 103.8
Min nTPM: 78.0
Sample B Female 82.9
Sample C Male 103.8
Sample D Male 78.0
Superior colliculi
nTPM: 100.1
Samples: 4

Max nTPM: 112.2
Min nTPM: 73.3
Sample A Female 108.8
Sample B Female 73.3
Sample C Male 106.1
Sample D Male 112.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 209.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 209.3
Samples: 4

Max nTPM: 219.1
Min nTPM: 192.7
Sample A Male 192.7
Sample B Male 219.1
Sample C Female 216.2
Sample D Female 209.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
73994671 Antisense, RP_051214_03_E06, Mouse strain C57BL/6J (56 days, male) 11.1
69735222 Antisense, RP_050503_02_C12, Mouse strain C57BL/6J (56 days, male) 8.3

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