HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:40.4 nTPM
HPA Brain:24.3 nTPM
GTEx:40.4 nTPM
FANTOM5:85.7 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:115.8 nTPM
Allen mouse:13.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002044Antibody HPA005471
Glial cells Not detectedMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.3
Sample id Sample description nTPM
Hippocampus
nTPM: 21.7
1898 Male, age 80, left hemisphere 29.0
2621 Female, age 67, right hemisphere 23.8
1855 Male, age 76, left hemisphere 22.1
2529 Female, age 94, left hemisphere 19.6
1911 Female, age 85, right hemisphere 18.9
2148 Female, age 91, left hemisphere 17.0
Dentate gyrus
nTPM: 21.6
1927 Female, age 91, both hemispheres 26.1
2010 Male, age 76, both hemispheres 25.7
2528 Male, age 74, both hemispheres 22.6
2246 Female, age 85, both hemispheres 19.2
2530 Female, age 94, left hemisphere 18.6
2531 Female, age 67, both hemispheres 17.3
Entorhinal gyrus
nTPM: 18.5
2764 Male, age 80, right hemisphere 23.2
2117 Female, age 91, right hemisphere 20.7
1938 Female, age 85, left hemisphere 20.6
1787 Male, age 76, left hemisphere 20.3
2613 Female, age 94, left hemisphere 16.4
2686 Male, age 75, right hemisphere 9.8
Hippocampus, CA1
nTPM: 24.3
2749 Male, age 80, left hemisphere 37.1
1873 Female, age 85, both hemispheres 24.4
2045 Male, age 76, both hemispheres 21.9
2527 Male, age 74, both hemispheres 19.8
2082 Female, age 91, right hemisphere 18.3
Hippocampus, CA2
nTPM: 23.5
1892 Male, age 76, both hemispheres 29.2
2249 Male, age 74, both hemispheres 27.5
1963 Male, age 80, left hemisphere 27.0
2437 Female, age 94, left hemisphere 21.0
1940 Female, age 85, left hemisphere 19.8
2113 Female, age 91, right hemisphere 16.5
Hippocampus, CA3
nTPM: 22.2
2137 Male, age 80, left hemisphere 28.8
2436 Male, age 74, both hemispheres 27.2
1867 Male, age 76, both hemispheres 25.9
2620 Female, age 94, left hemisphere 19.1
1891 Female, age 85, both hemispheres 19.0
2861 Female, age 67, both hemispheres 13.4
Parahippocampal cortex
nTPM: 19.3
1850 Male, age 80, both hemispheres 23.8
1990 Female, age 91, right hemisphere 21.8
1933 Female, age 85, both hemispheres 21.6
2250 Female, age 67, right hemisphere 21.6
2532 Female, age 72, left hemisphere 21.1
2245 Female, age 91, both hemispheres 19.8
2018 Male, age 76, both hemispheres 19.3
2692 Male, age 74, both hemispheres 14.9
2693 Female, age 94, both hemispheres 14.9
2622 Female, age 67, right hemisphere 13.9
Perirhinal gyrus
nTPM: 24.2
1847 Female, age 91, left hemisphere 29.0
1794 Male, age 80, right hemisphere 26.1
1841 Female, age 85, right hemisphere 24.3
2521 Female, age 94, right hemisphere 22.2
2848 Male, age 76, right hemisphere 19.6
Subiculum
nTPM: 19.2
1901 Male, age 80, both hemispheres 24.9
1977 Female, age 85, both hemispheres 22.7
2042 Male, age 76, both hemispheres 20.0
2619 Male, age 74, both hemispheres 18.7
2729 Female, age 91, right hemisphere 15.9
2438 Female, age 94, left hemisphere 13.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 40.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.4
Samples: 197

Max nTPM: 66.2
Min nTPM: 22.5
Std nTPM: 8.2
Median nTPM: 38.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 66.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 64.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 62.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 62.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 61.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 58.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 56.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 56.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 56.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 56.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 55.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 85.7
FF:10169-103B7 60 years, female 98.6
FF:10153-102I9 76 years, female 72.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.0
Pig sample Sample description nTPM
Subiculum
nTPM: 25.9
Samples: 4

Max nTPM: 27.3
Min nTPM: 25.1
Sample A Female 27.3
Sample B Female 25.6
Sample C Male 25.6
Sample D Male 25.1
Dorsal hippocampus
nTPM: 31.0
Samples: 4

Max nTPM: 35.9
Min nTPM: 27.6
Sample A Female 35.9
Sample B Female 31.0
Sample C Male 29.5
Sample D Male 27.6
Entorhinal cortex
nTPM: 27.0
Samples: 4

Max nTPM: 29.1
Min nTPM: 24.4
Sample A Female 28.8
Sample B Female 29.1
Sample C Male 24.4
Sample D Male 25.7
Ventral hippocampus
nTPM: 29.2
Samples: 4

Max nTPM: 31.0
Min nTPM: 26.1
Sample A Female 31.0
Sample B Female 26.1
Sample C Male 29.6
Sample D Male 30.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 115.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 106.3
Samples: 4

Max nTPM: 115.1
Min nTPM: 95.4
Sample A Male 100.1
Sample B Male 114.6
Sample C Female 115.1
Sample D Female 95.4
Hippocampal formation
nTPM: 115.8
Samples: 4

Max nTPM: 126.8
Min nTPM: 110.3
Sample A Male 126.8
Sample B Male 110.3
Sample C Female 111.0
Sample D Female 115.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.2
513224 Antisense, RP_040810_01_B11, Mouse strain C57BL/6J (56 days, male) 13.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org