MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.0 nTPM
HPA Brain:54.8 nTPM
GTEx:59.0 nTPM
FANTOM5:70.4 Scaled Tags Per Million
Pig:53.2 nTPM
Mouse:70.1 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.6
2586 Male, age 75, left hemisphere 83.1
2828 Female, age 72, unknown 55.3
2666 Male, age 74, left hemisphere 55.2
2411 Female, age 72, unknown 53.9
2019 Male, age 18, unknown 53.3
1827 Male, age 72, unknown 50.1
1833 Male, age 53, unknown 49.2
1830 Male, age 51, unknown 47.6
1870 Female, age 42, unknown 46.8
2219 Male, age 76, both hemispheres 41.2
Dorsal raphe nucleus
nTPM: 51.9
2298 Female, age 72, unknown 59.0
2047 Male, age 72, unknown 53.6
1828 Male, age 53, unknown 51.3
2750 Male, age 76, both hemispheres 50.3
2016 Female, age 72, unknown 45.5
Inferior colliculus
nTPM: 44.7
1890 Male, age 53, unknown 48.5
2849 Male, age 72, unknown 44.1
1848 Female, age 42, unknown 43.6
2097 Female, age 72, unknown 42.5
Median raphe nucleus
nTPM: 54.1
2220 Male, age 76, midline 54.1
Periaquaductal grey, anterior
nTPM: 54.8
1795 Male, age 51, unknown 55.7
2502 Female, age 75, unknown 54.8
1947 Male, age 18, unknown 54.0
Periaquaductal grey, dorsal
nTPM: 46.8
1831 Male, age 72, unknown 50.4
1840 Male, age 53, unknown 48.7
2850 Male, age 76, both hemispheres 44.3
2464 Female, age 72, unknown 43.7
Periaquaductal grey, lateral
nTPM: 42.8
2140 Male, age 76, both hemispheres 45.4
2053 Male, age 18, unknown 43.2
2272 Male, age 74, both hemispheres 39.8
Pretectal area
nTPM: 50.3
2007 Male, age 72, unknown 61.3
1817 Female, age 42, unknown 59.7
1816 Male, age 51, unknown 58.0
1815 Male, age 53, unknown 52.8
1944 Female, age 72, unknown 52.1
2667 Female, age 75, unknown 50.2
2407 Male, age 75, both hemispheres 49.2
2316 Male, age 76, right hemisphere 45.6
2825 Male, age 18, unknown 44.4
2224 Female, age 72, unknown 41.3
2273 Male, age 74, both hemispheres 38.2
Red nucleus
nTPM: 50.7
2584 Male, age 75, left hemisphere 58.5
2785 Male, age 18, unknown 57.9
1904 Male, age 53, unknown 55.6
2588 Male, age 74, left hemisphere 52.0
2769 Male, age 72, unknown 51.1
2503 Female, age 72, unknown 50.8
2725 Female, age 75, unknown 50.0
1865 Male, age 51, unknown 48.4
2227 Male, age 72, unknown 48.3
1821 Female, age 72, unknown 46.6
1954 Female, age 42, unknown 44.7
2823 Male, age 76, right hemisphere 44.3
Substantia nigra
nTPM: 52.4
1916 Female, age 42, unknown 65.1
2665 Male, age 74, both hemispheres 64.1
2583 Male, age 75, right hemisphere 60.5
1851 Male, age 51, unknown 58.8
1889 Female, age 72, unknown 49.8
2590 Female, age 75, unknown 49.8
2699 Male, age 18, unknown 48.0
1941 Male, age 53, unknown 44.5
2409 Female, age 72, unknown 42.7
2241 Male, age 72, unknown 40.5
Superior colliculus
nTPM: 50.8
2664 Male, age 75, both hemispheres 70.3
2087 Female, age 72, unknown 53.8
2261 Male, age 18, unknown 52.6
2668 Female, age 75, unknown 52.2
1995 Male, age 72, unknown 51.3
1796 Male, age 53, unknown 49.7
2587 Male, age 74, left hemisphere 46.2
1913 Female, age 42, unknown 45.8
1839 Male, age 51, unknown 44.9
1895 Male, age 76, right hemisphere 41.1
Ventral tegmental area
nTPM: 52.1
1915 Female, age 42, unknown 57.5
2410 Female, age 72, unknown 56.1
1942 Male, age 51, unknown 50.0
2223 Female, age 72, unknown 49.9
2021 Male, age 53, unknown 49.7
2218 Male, age 76, both hemispheres 49.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.0
Samples: 139

Max nTPM: 104.7
Min nTPM: 25.1
Std nTPM: 13.8
Median nTPM: 57.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 104.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 97.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 95.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 92.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 90.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 89.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 86.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 83.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 82.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 81.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 81.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.4
FF:10158-103A5 76 years, female 70.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.9
Samples: 4

Max nTPM: 60.3
Min nTPM: 43.1
Sample A Female 60.3
Sample B Female 43.1
Sample C Male 57.3
Sample D Male 50.8
Midbrain
nTPM: 53.2
Samples: 4

Max nTPM: 71.4
Min nTPM: 39.0
Sample A Female 71.4
Sample B Female 46.7
Sample C Male 55.6
Sample D Male 39.0
Periaqueductal gray
nTPM: 38.4
Samples: 3

Max nTPM: 42.4
Min nTPM: 35.1
Sample B Female 37.8
Sample C Male 42.4
Sample D Male 35.1
Superior colliculi
nTPM: 50.2
Samples: 4

Max nTPM: 53.7
Min nTPM: 47.4
Sample A Female 49.7
Sample B Female 47.4
Sample C Male 53.7
Sample D Male 50.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.1
Samples: 4

Max nTPM: 75.7
Min nTPM: 63.1
Sample A Male 75.7
Sample B Male 68.3
Sample C Female 63.1
Sample D Female 73.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69407409 Antisense, RP_050414_01_F03, Mouse strain C57BL/6J (56 days, male) 2.2
74988740 Antisense, RP_060315_04_B08, Mouse strain C57BL/6J (56 days, male) 0.9

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