MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.9 nTPM
HPA Brain:70.9 nTPM
GTEx:41.9 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:36.0 nTPM
Mouse:306.9 nTPM
Allen mouse:22.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.6
2019 Male, age 18, unknown 67.1
2411 Female, age 72, unknown 59.0
1827 Male, age 72, unknown 56.2
2586 Male, age 75, left hemisphere 54.2
2666 Male, age 74, left hemisphere 53.5
2219 Male, age 76, both hemispheres 50.1
1830 Male, age 51, unknown 47.8
1833 Male, age 53, unknown 47.5
1870 Female, age 42, unknown 45.6
2828 Female, age 72, unknown 45.3
Dorsal raphe nucleus
nTPM: 53.5
2298 Female, age 72, unknown 59.2
1828 Male, age 53, unknown 57.4
2047 Male, age 72, unknown 54.9
2750 Male, age 76, both hemispheres 51.6
2016 Female, age 72, unknown 44.3
Inferior colliculus
nTPM: 48.8
2097 Female, age 72, unknown 56.7
1890 Male, age 53, unknown 49.4
1848 Female, age 42, unknown 46.8
2849 Male, age 72, unknown 42.2
Median raphe nucleus
nTPM: 53.6
2220 Male, age 76, midline 53.6
Periaquaductal grey, anterior
nTPM: 46.7
2502 Female, age 75, unknown 51.8
1795 Male, age 51, unknown 47.5
1947 Male, age 18, unknown 40.9
Periaquaductal grey, dorsal
nTPM: 45.4
1831 Male, age 72, unknown 47.5
1840 Male, age 53, unknown 46.8
2464 Female, age 72, unknown 45.4
2850 Male, age 76, both hemispheres 42.0
Periaquaductal grey, lateral
nTPM: 40.8
2272 Male, age 74, both hemispheres 43.0
2053 Male, age 18, unknown 41.3
2140 Male, age 76, both hemispheres 38.3
Pretectal area
nTPM: 58.6
1817 Female, age 42, unknown 77.4
2007 Male, age 72, unknown 76.0
1944 Female, age 72, unknown 75.0
1816 Male, age 51, unknown 71.9
1815 Male, age 53, unknown 68.3
2407 Male, age 75, both hemispheres 50.5
2667 Female, age 75, unknown 49.1
2224 Female, age 72, unknown 48.8
2273 Male, age 74, both hemispheres 44.8
2825 Male, age 18, unknown 43.4
2316 Male, age 76, right hemisphere 39.1
Red nucleus
nTPM: 53.3
2785 Male, age 18, unknown 66.1
1821 Female, age 72, unknown 64.2
2588 Male, age 74, left hemisphere 61.4
2725 Female, age 75, unknown 56.5
2503 Female, age 72, unknown 54.8
1865 Male, age 51, unknown 51.1
1954 Female, age 42, unknown 49.9
2584 Male, age 75, left hemisphere 48.7
2823 Male, age 76, right hemisphere 48.6
1904 Male, age 53, unknown 48.0
2769 Male, age 72, unknown 46.2
2227 Male, age 72, unknown 44.0
Substantia nigra
nTPM: 70.9
1916 Female, age 42, unknown 96.2
2241 Male, age 72, unknown 78.8
1941 Male, age 53, unknown 76.8
1851 Male, age 51, unknown 76.6
2409 Female, age 72, unknown 75.8
1889 Female, age 72, unknown 69.3
2665 Male, age 74, both hemispheres 65.8
2699 Male, age 18, unknown 59.9
2590 Female, age 75, unknown 58.1
2583 Male, age 75, right hemisphere 51.6
Superior colliculus
nTPM: 51.7
2668 Female, age 75, unknown 60.2
2587 Male, age 74, left hemisphere 58.1
2087 Female, age 72, unknown 57.5
2261 Male, age 18, unknown 54.9
1895 Male, age 76, right hemisphere 53.0
1796 Male, age 53, unknown 49.4
1839 Male, age 51, unknown 47.6
1913 Female, age 42, unknown 47.0
1995 Male, age 72, unknown 46.2
2664 Male, age 75, both hemispheres 42.8
Ventral tegmental area
nTPM: 58.9
2410 Female, age 72, unknown 73.5
2218 Male, age 76, both hemispheres 68.5
1915 Female, age 42, unknown 64.8
1942 Male, age 51, unknown 50.0
2021 Male, age 53, unknown 48.7
2223 Female, age 72, unknown 47.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.9
Samples: 139

Max nTPM: 78.0
Min nTPM: 24.2
Std nTPM: 9.3
Median nTPM: 40.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 78.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 73.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 70.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 66.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 62.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 59.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 59.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 59.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 59.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 57.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 56.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.0
FF:10158-103A5 76 years, female 29.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.2
Samples: 4

Max nTPM: 41.6
Min nTPM: 28.2
Sample A Female 41.6
Sample B Female 28.2
Sample C Male 37.5
Sample D Male 29.3
Midbrain
nTPM: 34.2
Samples: 4

Max nTPM: 39.0
Min nTPM: 31.4
Sample A Female 32.1
Sample B Female 31.4
Sample C Male 39.0
Sample D Male 34.4
Periaqueductal gray
nTPM: 28.2
Samples: 3

Max nTPM: 29.7
Min nTPM: 26.8
Sample B Female 28.2
Sample C Male 29.7
Sample D Male 26.8
Superior colliculi
nTPM: 36.1
Samples: 4

Max nTPM: 41.6
Min nTPM: 26.7
Sample A Female 41.5
Sample B Female 26.7
Sample C Male 41.6
Sample D Male 34.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 306.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 306.9
Samples: 4

Max nTPM: 313.0
Min nTPM: 303.0
Sample A Male 303.0
Sample B Male 313.0
Sample C Female 306.8
Sample D Female 304.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.8
69013560 Antisense, RP_050309_02_E10, Mouse strain C57BL/6J (56 days, male) 22.8

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