MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:132.3 nTPM
HPA Brain:192.7 nTPM
GTEx:132.3 nTPM
FANTOM5:245.0 Scaled Tags Per Million
Pig:194.9 nTPM
Mouse:384.8 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 192.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 163.8
1870 Female, age 42, unknown 191.3
1827 Male, age 72, unknown 188.5
2411 Female, age 72, unknown 185.1
1833 Male, age 53, unknown 164.5
2019 Male, age 18, unknown 163.8
1830 Male, age 51, unknown 161.9
2828 Female, age 72, unknown 149.6
2219 Male, age 76, both hemispheres 145.5
2586 Male, age 75, left hemisphere 144.3
2666 Male, age 74, left hemisphere 143.6
Dorsal raphe nucleus
nTPM: 163.1
2298 Female, age 72, unknown 183.2
2016 Female, age 72, unknown 168.5
2750 Male, age 76, both hemispheres 161.5
2047 Male, age 72, unknown 152.3
1828 Male, age 53, unknown 149.7
Inferior colliculus
nTPM: 192.7
2097 Female, age 72, unknown 215.1
1848 Female, age 42, unknown 204.6
2849 Male, age 72, unknown 186.1
1890 Male, age 53, unknown 164.9
Median raphe nucleus
nTPM: 159.5
2220 Male, age 76, midline 159.5
Periaquaductal grey, anterior
nTPM: 183.7
1947 Male, age 18, unknown 194.9
2502 Female, age 75, unknown 187.2
1795 Male, age 51, unknown 169.0
Periaquaductal grey, dorsal
nTPM: 177.3
1840 Male, age 53, unknown 191.4
1831 Male, age 72, unknown 175.3
2464 Female, age 72, unknown 171.9
2850 Male, age 76, both hemispheres 170.5
Periaquaductal grey, lateral
nTPM: 172.7
2053 Male, age 18, unknown 189.4
2272 Male, age 74, both hemispheres 169.6
2140 Male, age 76, both hemispheres 159.2
Pretectal area
nTPM: 186.1
1816 Male, age 51, unknown 207.3
1944 Female, age 72, unknown 205.9
1815 Male, age 53, unknown 196.7
1817 Female, age 42, unknown 192.5
2007 Male, age 72, unknown 192.2
2273 Male, age 74, both hemispheres 189.9
2224 Female, age 72, unknown 185.6
2667 Female, age 75, unknown 181.7
2825 Male, age 18, unknown 175.8
2407 Male, age 75, both hemispheres 166.9
2316 Male, age 76, right hemisphere 153.1
Red nucleus
nTPM: 165.4
1821 Female, age 72, unknown 194.4
2503 Female, age 72, unknown 184.8
2725 Female, age 75, unknown 178.6
1865 Male, age 51, unknown 177.3
1954 Female, age 42, unknown 172.0
1904 Male, age 53, unknown 165.7
2785 Male, age 18, unknown 158.7
2588 Male, age 74, left hemisphere 157.0
2769 Male, age 72, unknown 155.1
2227 Male, age 72, unknown 149.9
2584 Male, age 75, left hemisphere 146.2
2823 Male, age 76, right hemisphere 145.0
Substantia nigra
nTPM: 162.9
1889 Female, age 72, unknown 194.5
2241 Male, age 72, unknown 185.4
2409 Female, age 72, unknown 176.7
1941 Male, age 53, unknown 174.2
2590 Female, age 75, unknown 165.6
2665 Male, age 74, both hemispheres 152.1
1916 Female, age 42, unknown 148.9
2583 Male, age 75, right hemisphere 147.1
1851 Male, age 51, unknown 146.1
2699 Male, age 18, unknown 138.9
Superior colliculus
nTPM: 175.9
1895 Male, age 76, right hemisphere 192.7
2261 Male, age 18, unknown 190.4
1913 Female, age 42, unknown 183.7
1796 Male, age 53, unknown 182.1
2587 Male, age 74, left hemisphere 180.2
1839 Male, age 51, unknown 178.2
2087 Female, age 72, unknown 177.8
1995 Male, age 72, unknown 165.6
2668 Female, age 75, unknown 158.1
2664 Male, age 75, both hemispheres 149.7
Ventral tegmental area
nTPM: 163.2
2410 Female, age 72, unknown 181.2
2223 Female, age 72, unknown 172.2
1942 Male, age 51, unknown 161.2
2021 Male, age 53, unknown 158.2
1915 Female, age 42, unknown 156.9
2218 Male, age 76, both hemispheres 149.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 132.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.3
Samples: 139

Max nTPM: 239.3
Min nTPM: 83.5
Std nTPM: 26.1
Median nTPM: 128.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 239.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 231.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 199.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 185.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 184.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 181.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 180.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 179.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 175.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 173.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 171.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 245.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 245.0
FF:10158-103A5 76 years, female 245.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 194.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 152.2
Samples: 4

Max nTPM: 177.9
Min nTPM: 128.8
Sample A Female 177.9
Sample B Female 148.2
Sample C Male 153.7
Sample D Male 128.8
Midbrain
nTPM: 194.9
Samples: 4

Max nTPM: 216.8
Min nTPM: 171.8
Sample A Female 192.4
Sample B Female 171.8
Sample C Male 216.8
Sample D Male 198.4
Periaqueductal gray
nTPM: 154.2
Samples: 3

Max nTPM: 161.7
Min nTPM: 149.2
Sample B Female 149.2
Sample C Male 161.7
Sample D Male 151.6
Superior colliculi
nTPM: 183.1
Samples: 4

Max nTPM: 199.9
Min nTPM: 161.0
Sample A Female 190.2
Sample B Female 161.0
Sample C Male 199.9
Sample D Male 181.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 384.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 384.9
Samples: 4

Max nTPM: 393.8
Min nTPM: 369.9
Sample A Male 391.2
Sample B Male 393.8
Sample C Female 384.5
Sample D Female 369.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
67752309 Antisense, RP_040922_01_D07, Mouse strain C57BL/6J (56 days, male) 19.1
68196969 Antisense, RP_040922_01_D07, Mouse strain C57BL/6J (56 days, male) 13.0
314 Antisense, RP_Baylor_103388, Mouse strain C57BL/6J (56 days, male) 1.1

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