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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.6
nTPM
HPA Brain:
24.8
nTPM
GTEx:
9.6
nTPM
Pig:
13.6
nTPM
Mouse:
29.3
nTPM
Allen mouse:
4.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
24.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 23.6
2666
Male, age 74, left hemisphere
25.5
2019
Male, age 18, unknown
25.1
2586
Male, age 75, left hemisphere
24.7
1827
Male, age 72, unknown
24.6
1870
Female, age 42, unknown
23.1
2411
Female, age 72, unknown
23.1
2828
Female, age 72, unknown
22.8
1830
Male, age 51, unknown
22.5
2219
Male, age 76, both hemispheres
22.5
1833
Male, age 53, unknown
21.9
Dorsal raphe nucleus nTPM: 22.4
2016
Female, age 72, unknown
23.5
2047
Male, age 72, unknown
23.3
1828
Male, age 53, unknown
23.1
2298
Female, age 72, unknown
22.1
2750
Male, age 76, both hemispheres
20.2
Inferior colliculus nTPM: 24.8
1848
Female, age 42, unknown
25.5
2849
Male, age 72, unknown
24.9
2097
Female, age 72, unknown
24.7
1890
Male, age 53, unknown
24.1
Median raphe nucleus nTPM: 20.5
2220
Male, age 76, midline
20.5
Periaquaductal grey, anterior nTPM: 22.3
1947
Male, age 18, unknown
22.8
2502
Female, age 75, unknown
22.2
1795
Male, age 51, unknown
22.0
Periaquaductal grey, dorsal nTPM: 23.4
1840
Male, age 53, unknown
24.2
2850
Male, age 76, both hemispheres
23.8
1831
Male, age 72, unknown
23.0
2464
Female, age 72, unknown
22.7
Periaquaductal grey, lateral nTPM: 22.4
2140
Male, age 76, both hemispheres
24.1
2053
Male, age 18, unknown
22.3
2272
Male, age 74, both hemispheres
20.7
Pretectal area nTPM: 24.3
1817
Female, age 42, unknown
27.8
2007
Male, age 72, unknown
27.4
1816
Male, age 51, unknown
26.6
1815
Male, age 53, unknown
25.4
1944
Female, age 72, unknown
24.5
2316
Male, age 76, right hemisphere
23.3
2273
Male, age 74, both hemispheres
23.2
2407
Male, age 75, both hemispheres
23.0
2825
Male, age 18, unknown
22.6
2667
Female, age 75, unknown
22.0
2224
Female, age 72, unknown
21.5
Red nucleus nTPM: 23.2
2503
Female, age 72, unknown
25.8
2785
Male, age 18, unknown
25.4
1821
Female, age 72, unknown
24.5
2588
Male, age 74, left hemisphere
24.5
2725
Female, age 75, unknown
24.1
2584
Male, age 75, left hemisphere
23.2
1954
Female, age 42, unknown
22.9
1865
Male, age 51, unknown
22.8
1904
Male, age 53, unknown
21.8
2823
Male, age 76, right hemisphere
21.2
2227
Male, age 72, unknown
21.0
2769
Male, age 72, unknown
20.7
Substantia nigra nTPM: 24.1
1941
Male, age 53, unknown
26.7
2583
Male, age 75, right hemisphere
26.4
1889
Female, age 72, unknown
24.9
2241
Male, age 72, unknown
24.7
2665
Male, age 74, both hemispheres
24.7
2590
Female, age 75, unknown
23.7
1916
Female, age 42, unknown
23.0
1851
Male, age 51, unknown
22.8
2409
Female, age 72, unknown
22.4
2699
Male, age 18, unknown
21.5
Superior colliculus nTPM: 23.4
2668
Female, age 75, unknown
25.1
1839
Male, age 51, unknown
24.2
1796
Male, age 53, unknown
23.7
2261
Male, age 18, unknown
23.5
2087
Female, age 72, unknown
23.3
2587
Male, age 74, left hemisphere
23.3
1995
Male, age 72, unknown
22.9
1913
Female, age 42, unknown
22.6
1895
Male, age 76, right hemisphere
22.5
2664
Male, age 75, both hemispheres
22.4
Ventral tegmental area nTPM: 22.1
2410
Female, age 72, unknown
24.2
1915
Female, age 42, unknown
22.8
2223
Female, age 72, unknown
22.7
1942
Male, age 51, unknown
21.9
2021
Male, age 53, unknown
20.6
2218
Male, age 76, both hemispheres
20.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
9.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 9.6
Samples: 139
Max nTPM: 17.5
Min nTPM: 3.8
Std nTPM: 2.3
Median nTPM: 9.3
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
29.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 29.3
Samples: 4
Max nTPM: 32.1
Min nTPM: 27.9
Sample A
Male
27.9
Sample B
Male
32.1
Sample C
Female
28.6
Sample D
Female
28.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
