MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.4 nTPM
HPA Brain:34.1 nTPM
GTEx:19.4 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:5.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.1
2219 Male, age 76, both hemispheres 34.1
2411 Female, age 72, unknown 33.7
1870 Female, age 42, unknown 32.1
1833 Male, age 53, unknown 31.9
2666 Male, age 74, left hemisphere 30.0
1827 Male, age 72, unknown 29.8
1830 Male, age 51, unknown 29.5
2019 Male, age 18, unknown 29.2
2828 Female, age 72, unknown 27.6
2586 Male, age 75, left hemisphere 23.3
Dorsal raphe nucleus
nTPM: 30.7
2016 Female, age 72, unknown 34.2
2298 Female, age 72, unknown 32.2
2750 Male, age 76, both hemispheres 31.4
1828 Male, age 53, unknown 30.3
2047 Male, age 72, unknown 25.2
Inferior colliculus
nTPM: 33.7
2849 Male, age 72, unknown 36.0
1848 Female, age 42, unknown 33.6
2097 Female, age 72, unknown 33.3
1890 Male, age 53, unknown 32.1
Median raphe nucleus
nTPM: 27.2
2220 Male, age 76, midline 27.2
Periaquaductal grey, anterior
nTPM: 32.4
2502 Female, age 75, unknown 39.1
1947 Male, age 18, unknown 29.9
1795 Male, age 51, unknown 28.3
Periaquaductal grey, dorsal
nTPM: 33.9
1840 Male, age 53, unknown 36.8
2464 Female, age 72, unknown 34.8
2850 Male, age 76, both hemispheres 33.6
1831 Male, age 72, unknown 30.4
Periaquaductal grey, lateral
nTPM: 29.0
2140 Male, age 76, both hemispheres 31.1
2053 Male, age 18, unknown 29.6
2272 Male, age 74, both hemispheres 26.4
Pretectal area
nTPM: 30.5
2224 Female, age 72, unknown 36.9
1944 Female, age 72, unknown 34.0
1816 Male, age 51, unknown 33.9
1817 Female, age 42, unknown 31.9
2667 Female, age 75, unknown 31.2
1815 Male, age 53, unknown 30.4
2007 Male, age 72, unknown 30.4
2316 Male, age 76, right hemisphere 28.7
2825 Male, age 18, unknown 28.6
2273 Male, age 74, both hemispheres 27.1
2407 Male, age 75, both hemispheres 22.6
Red nucleus
nTPM: 27.3
1904 Male, age 53, unknown 31.6
2503 Female, age 72, unknown 29.6
1821 Female, age 72, unknown 29.0
2588 Male, age 74, left hemisphere 28.2
2227 Male, age 72, unknown 27.9
2785 Male, age 18, unknown 27.1
1954 Female, age 42, unknown 26.4
2725 Female, age 75, unknown 26.4
1865 Male, age 51, unknown 26.2
2769 Male, age 72, unknown 26.2
2584 Male, age 75, left hemisphere 24.6
2823 Male, age 76, right hemisphere 24.1
Substantia nigra
nTPM: 34.1
2241 Male, age 72, unknown 41.9
2409 Female, age 72, unknown 41.5
2699 Male, age 18, unknown 39.2
1851 Male, age 51, unknown 38.7
2665 Male, age 74, both hemispheres 37.9
1916 Female, age 42, unknown 36.0
1889 Female, age 72, unknown 29.3
1941 Male, age 53, unknown 27.9
2583 Male, age 75, right hemisphere 25.1
2590 Female, age 75, unknown 23.5
Superior colliculus
nTPM: 33.1
2668 Female, age 75, unknown 38.4
2587 Male, age 74, left hemisphere 36.9
1895 Male, age 76, right hemisphere 35.9
1995 Male, age 72, unknown 33.7
1839 Male, age 51, unknown 33.0
2261 Male, age 18, unknown 32.3
1913 Female, age 42, unknown 31.8
2087 Female, age 72, unknown 31.0
1796 Male, age 53, unknown 30.4
2664 Male, age 75, both hemispheres 27.8
Ventral tegmental area
nTPM: 29.6
1915 Female, age 42, unknown 36.6
2021 Male, age 53, unknown 29.9
2218 Male, age 76, both hemispheres 28.5
2223 Female, age 72, unknown 28.0
2410 Female, age 72, unknown 27.3
1942 Male, age 51, unknown 27.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.4
Samples: 139

Max nTPM: 30.4
Min nTPM: 12.7
Std nTPM: 3.5
Median nTPM: 18.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 30.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 30.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 29.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 29.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 27.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 26.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 26.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 26.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 26.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 25.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 25.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.9
FF:10158-103A5 76 years, female 32.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.6
Samples: 4

Max nTPM: 11.8
Min nTPM: 7.4
Sample A Female 11.8
Sample B Female 9.4
Sample C Male 9.8
Sample D Male 7.4
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.0
Sample A Female 10.9
Sample B Female 12.1
Sample C Male 9.0
Sample D Male 10.1
Periaqueductal gray
nTPM: 10.2
Samples: 3

Max nTPM: 10.9
Min nTPM: 9.6
Sample B Female 9.6
Sample C Male 10.9
Sample D Male 10.0
Superior colliculi
nTPM: 10.7
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.5
Sample A Female 11.6
Sample B Female 9.9
Sample C Male 11.7
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.3
Sample A Male 4.3
Sample B Male 5.5
Sample C Female 4.7
Sample D Female 5.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71325264 Antisense, RP_050825_02_E03, Mouse strain C57BL/6J (56 days, male) 0.0

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