MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA Brain:44.8 nTPM
GTEx:9.0 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:18.3 nTPM
Mouse:14.5 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.9
2019 Male, age 18, unknown 68.0
2586 Male, age 75, left hemisphere 46.7
2828 Female, age 72, unknown 38.6
2666 Male, age 74, left hemisphere 34.2
1827 Male, age 72, unknown 33.4
2411 Female, age 72, unknown 29.1
1833 Male, age 53, unknown 28.3
1830 Male, age 51, unknown 27.4
2219 Male, age 76, both hemispheres 27.2
1870 Female, age 42, unknown 26.2
Dorsal raphe nucleus
nTPM: 26.9
2750 Male, age 76, both hemispheres 38.2
2047 Male, age 72, unknown 28.0
1828 Male, age 53, unknown 25.6
2298 Female, age 72, unknown 23.3
2016 Female, age 72, unknown 19.1
Inferior colliculus
nTPM: 24.1
2849 Male, age 72, unknown 28.5
1848 Female, age 42, unknown 24.4
1890 Male, age 53, unknown 22.1
2097 Female, age 72, unknown 21.4
Median raphe nucleus
nTPM: 35.9
2220 Male, age 76, midline 35.9
Periaquaductal grey, anterior
nTPM: 28.6
1795 Male, age 51, unknown 34.1
2502 Female, age 75, unknown 33.5
1947 Male, age 18, unknown 18.1
Periaquaductal grey, dorsal
nTPM: 28.6
1831 Male, age 72, unknown 31.5
2850 Male, age 76, both hemispheres 30.6
2464 Female, age 72, unknown 29.6
1840 Male, age 53, unknown 22.5
Periaquaductal grey, lateral
nTPM: 30.3
2140 Male, age 76, both hemispheres 37.8
2272 Male, age 74, both hemispheres 27.1
2053 Male, age 18, unknown 26.1
Pretectal area
nTPM: 44.8
1816 Male, age 51, unknown 71.0
2007 Male, age 72, unknown 63.0
1817 Female, age 42, unknown 62.1
1944 Female, age 72, unknown 61.8
1815 Male, age 53, unknown 50.6
2316 Male, age 76, right hemisphere 42.8
2407 Male, age 75, both hemispheres 35.6
2667 Female, age 75, unknown 32.8
2224 Female, age 72, unknown 25.7
2825 Male, age 18, unknown 24.0
2273 Male, age 74, both hemispheres 23.0
Red nucleus
nTPM: 36.5
2785 Male, age 18, unknown 67.2
2588 Male, age 74, left hemisphere 46.5
2823 Male, age 76, right hemisphere 44.3
2584 Male, age 75, left hemisphere 42.9
2725 Female, age 75, unknown 36.5
2503 Female, age 72, unknown 32.1
1865 Male, age 51, unknown 31.8
2769 Male, age 72, unknown 31.5
1904 Male, age 53, unknown 29.8
2227 Male, age 72, unknown 28.4
1954 Female, age 42, unknown 26.6
1821 Female, age 72, unknown 20.7
Substantia nigra
nTPM: 29.9
1941 Male, age 53, unknown 54.4
1889 Female, age 72, unknown 47.1
2583 Male, age 75, right hemisphere 29.8
2590 Female, age 75, unknown 29.4
2665 Male, age 74, both hemispheres 28.7
2409 Female, age 72, unknown 25.6
1851 Male, age 51, unknown 24.8
2699 Male, age 18, unknown 21.0
1916 Female, age 42, unknown 20.9
2241 Male, age 72, unknown 17.4
Superior colliculus
nTPM: 39.2
2087 Female, age 72, unknown 58.0
1913 Female, age 42, unknown 43.8
2664 Male, age 75, both hemispheres 40.9
1995 Male, age 72, unknown 40.3
2261 Male, age 18, unknown 39.9
1895 Male, age 76, right hemisphere 39.1
2668 Female, age 75, unknown 36.8
1796 Male, age 53, unknown 32.9
1839 Male, age 51, unknown 31.0
2587 Male, age 74, left hemisphere 29.0
Ventral tegmental area
nTPM: 25.8
2218 Male, age 76, both hemispheres 33.7
2223 Female, age 72, unknown 25.9
2410 Female, age 72, unknown 25.8
2021 Male, age 53, unknown 25.0
1942 Male, age 51, unknown 23.2
1915 Female, age 42, unknown 21.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 29.1
Min nTPM: 4.0
Std nTPM: 3.2
Median nTPM: 8.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 27.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 17.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 15.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 14.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 12.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 12.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 12.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 12.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 12.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.4
Samples: 4

Max nTPM: 12.9
Min nTPM: 5.5
Sample A Female 12.9
Sample B Female 12.1
Sample C Male 11.2
Sample D Male 5.5
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 40.3
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 6.3
Sample C Male 40.3
Sample D Male 10.7
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 8.7
Min nTPM: 4.9
Sample B Female 6.3
Sample C Male 8.7
Sample D Male 4.9
Superior colliculi
nTPM: 18.3
Samples: 4

Max nTPM: 32.7
Min nTPM: 11.6
Sample A Female 11.6
Sample B Female 15.3
Sample C Male 32.7
Sample D Male 13.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 15.2
Min nTPM: 13.9
Sample A Male 14.3
Sample B Male 15.2
Sample C Female 14.4
Sample D Female 13.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69782581 Antisense, RP_050505_03_C11, Mouse strain C57BL/6J (56 days, male) 2.1
73997146 Antisense, RP_051214_03_F05, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org