HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:76.8 nTPM
HPA Brain:44.8 nTPM
GTEx:76.8 nTPM
FANTOM5:84.9 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:48.3 nTPM
Allen mouse:1.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039223Antibody HPA040781
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Hippocampus
nTPM: 41.4
2529 Female, age 94, left hemisphere 45.9
1898 Male, age 80, left hemisphere 44.8
1911 Female, age 85, right hemisphere 44.5
2621 Female, age 67, right hemisphere 38.6
2148 Female, age 91, left hemisphere 37.8
1855 Male, age 76, left hemisphere 36.8
Dentate gyrus
nTPM: 41.6
2530 Female, age 94, left hemisphere 54.2
2010 Male, age 76, both hemispheres 46.9
2528 Male, age 74, both hemispheres 46.1
2246 Female, age 85, both hemispheres 34.8
1927 Female, age 91, both hemispheres 33.9
2531 Female, age 67, both hemispheres 33.8
Entorhinal gyrus
nTPM: 44.8
2117 Female, age 91, right hemisphere 63.6
2764 Male, age 80, right hemisphere 53.1
1787 Male, age 76, left hemisphere 40.9
2613 Female, age 94, left hemisphere 39.6
1938 Female, age 85, left hemisphere 39.0
2686 Male, age 75, right hemisphere 32.8
Hippocampus, CA1
nTPM: 38.7
2749 Male, age 80, left hemisphere 45.6
2527 Male, age 74, both hemispheres 43.6
2082 Female, age 91, right hemisphere 39.8
1873 Female, age 85, both hemispheres 34.3
2045 Male, age 76, both hemispheres 30.0
Hippocampus, CA2
nTPM: 43.5
2249 Male, age 74, both hemispheres 54.4
1963 Male, age 80, left hemisphere 53.2
1940 Female, age 85, left hemisphere 41.8
2437 Female, age 94, left hemisphere 41.2
2113 Female, age 91, right hemisphere 38.6
1892 Male, age 76, both hemispheres 32.2
Hippocampus, CA3
nTPM: 37.7
2436 Male, age 74, both hemispheres 45.8
1891 Female, age 85, both hemispheres 42.1
2620 Female, age 94, left hemisphere 39.4
1867 Male, age 76, both hemispheres 37.7
2137 Male, age 80, left hemisphere 34.4
2861 Female, age 67, both hemispheres 27.1
Parahippocampal cortex
nTPM: 35.0
1990 Female, age 91, right hemisphere 42.5
2245 Female, age 91, both hemispheres 41.5
2532 Female, age 72, left hemisphere 38.1
2018 Male, age 76, both hemispheres 37.7
1933 Female, age 85, both hemispheres 35.8
2692 Male, age 74, both hemispheres 35.4
1850 Male, age 80, both hemispheres 32.9
2250 Female, age 67, right hemisphere 32.9
2693 Female, age 94, both hemispheres 28.8
2622 Female, age 67, right hemisphere 24.8
Perirhinal gyrus
nTPM: 32.4
1794 Male, age 80, right hemisphere 37.6
2521 Female, age 94, right hemisphere 36.6
1847 Female, age 91, left hemisphere 33.2
2848 Male, age 76, right hemisphere 28.1
1841 Female, age 85, right hemisphere 26.6
Subiculum
nTPM: 44.0
2042 Male, age 76, both hemispheres 52.1
1901 Male, age 80, both hemispheres 50.5
1977 Female, age 85, both hemispheres 48.4
2729 Female, age 91, right hemisphere 41.9
2619 Male, age 74, both hemispheres 40.9
2438 Female, age 94, left hemisphere 30.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 76.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 76.8
Samples: 197

Max nTPM: 182.2
Min nTPM: 32.3
Std nTPM: 25.8
Median nTPM: 71.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 182.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 174.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 170.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 153.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 148.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 136.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 130.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 128.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 125.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 125.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 124.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 84.9
FF:10169-103B7 60 years, female 85.1
FF:10153-102I9 76 years, female 84.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Subiculum
nTPM: 27.6
Samples: 4

Max nTPM: 33.7
Min nTPM: 22.8
Sample A Female 33.7
Sample B Female 27.9
Sample C Male 26.0
Sample D Male 22.8
Dorsal hippocampus
nTPM: 33.8
Samples: 4

Max nTPM: 44.8
Min nTPM: 21.9
Sample A Female 44.8
Sample B Female 30.2
Sample C Male 38.4
Sample D Male 21.9
Entorhinal cortex
nTPM: 24.9
Samples: 4

Max nTPM: 28.5
Min nTPM: 20.1
Sample A Female 24.1
Sample B Female 28.5
Sample C Male 26.8
Sample D Male 20.1
Ventral hippocampus
nTPM: 33.1
Samples: 4

Max nTPM: 42.4
Min nTPM: 23.2
Sample A Female 35.3
Sample B Female 23.2
Sample C Male 42.4
Sample D Male 31.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 48.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 37.7
Samples: 4

Max nTPM: 41.3
Min nTPM: 33.5
Sample A Male 38.7
Sample B Male 37.1
Sample C Female 41.3
Sample D Female 33.5
Hippocampal formation
nTPM: 48.3
Samples: 4

Max nTPM: 54.0
Min nTPM: 42.9
Sample A Male 47.6
Sample B Male 42.9
Sample C Female 48.6
Sample D Female 54.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.4
74800925 Antisense, RP_060315_02_A09, Mouse strain C57BL/6J (56 days, male) 1.8
413828 Antisense, RP_040809_01_H06, Mouse strain C57BL/6J (56 days, male) 0.9

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