MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.3 nTPM
HPA Brain:93.2 nTPM
GTEx:52.3 nTPM
FANTOM5:188.3 Scaled Tags Per Million
Pig:108.1 nTPM
Mouse:109.8 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 93.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.2
2666 Male, age 74, left hemisphere 77.0
2219 Male, age 76, both hemispheres 76.4
1827 Male, age 72, unknown 76.3
2411 Female, age 72, unknown 72.4
2019 Male, age 18, unknown 71.3
2586 Male, age 75, left hemisphere 68.3
1870 Female, age 42, unknown 67.5
2828 Female, age 72, unknown 64.9
1833 Male, age 53, unknown 61.8
1830 Male, age 51, unknown 56.2
Dorsal raphe nucleus
nTPM: 76.6
2298 Female, age 72, unknown 95.1
2047 Male, age 72, unknown 78.6
2750 Male, age 76, both hemispheres 75.1
1828 Male, age 53, unknown 71.4
2016 Female, age 72, unknown 63.0
Inferior colliculus
nTPM: 65.5
2097 Female, age 72, unknown 76.3
1890 Male, age 53, unknown 64.8
1848 Female, age 42, unknown 61.8
2849 Male, age 72, unknown 58.9
Median raphe nucleus
nTPM: 93.2
2220 Male, age 76, midline 93.2
Periaquaductal grey, anterior
nTPM: 78.5
1947 Male, age 18, unknown 79.6
1795 Male, age 51, unknown 78.1
2502 Female, age 75, unknown 77.7
Periaquaductal grey, dorsal
nTPM: 68.3
1840 Male, age 53, unknown 76.2
2850 Male, age 76, both hemispheres 68.8
2464 Female, age 72, unknown 66.5
1831 Male, age 72, unknown 61.9
Periaquaductal grey, lateral
nTPM: 65.2
2053 Male, age 18, unknown 66.2
2272 Male, age 74, both hemispheres 65.4
2140 Male, age 76, both hemispheres 64.1
Pretectal area
nTPM: 78.5
1816 Male, age 51, unknown 100.5
1817 Female, age 42, unknown 92.0
2007 Male, age 72, unknown 89.9
2224 Female, age 72, unknown 84.0
1944 Female, age 72, unknown 83.7
2667 Female, age 75, unknown 82.7
1815 Male, age 53, unknown 82.5
2273 Male, age 74, both hemispheres 67.5
2825 Male, age 18, unknown 65.1
2316 Male, age 76, right hemisphere 61.3
2407 Male, age 75, both hemispheres 54.5
Red nucleus
nTPM: 63.3
2725 Female, age 75, unknown 81.2
1821 Female, age 72, unknown 76.0
2503 Female, age 72, unknown 66.8
2785 Male, age 18, unknown 66.8
2584 Male, age 75, left hemisphere 61.7
2588 Male, age 74, left hemisphere 61.1
1954 Female, age 42, unknown 61.0
1865 Male, age 51, unknown 60.2
1904 Male, age 53, unknown 58.9
2769 Male, age 72, unknown 56.0
2227 Male, age 72, unknown 55.9
2823 Male, age 76, right hemisphere 53.4
Substantia nigra
nTPM: 92.1
2241 Male, age 72, unknown 128.5
1916 Female, age 42, unknown 125.8
1851 Male, age 51, unknown 106.3
1941 Male, age 53, unknown 91.5
2665 Male, age 74, both hemispheres 86.1
2409 Female, age 72, unknown 85.4
1889 Female, age 72, unknown 84.8
2699 Male, age 18, unknown 79.2
2583 Male, age 75, right hemisphere 67.3
2590 Female, age 75, unknown 65.6
Superior colliculus
nTPM: 67.8
1796 Male, age 53, unknown 81.1
2087 Female, age 72, unknown 80.2
2261 Male, age 18, unknown 80.0
2668 Female, age 75, unknown 67.4
2587 Male, age 74, left hemisphere 66.7
1895 Male, age 76, right hemisphere 64.2
2664 Male, age 75, both hemispheres 63.1
1839 Male, age 51, unknown 62.3
1913 Female, age 42, unknown 59.6
1995 Male, age 72, unknown 54.0
Ventral tegmental area
nTPM: 81.8
1915 Female, age 42, unknown 95.5
2410 Female, age 72, unknown 93.1
2218 Male, age 76, both hemispheres 88.7
1942 Male, age 51, unknown 73.0
2021 Male, age 53, unknown 70.4
2223 Female, age 72, unknown 70.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.3
Samples: 139

Max nTPM: 117.4
Min nTPM: 22.5
Std nTPM: 16.4
Median nTPM: 48.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 117.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 116.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 100.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 97.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 92.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 88.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 87.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 82.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 82.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 77.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 76.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 188.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 188.3
FF:10158-103A5 76 years, female 188.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 108.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.1
Samples: 4

Max nTPM: 123.8
Min nTPM: 65.7
Sample A Female 123.8
Sample B Female 77.2
Sample C Male 97.6
Sample D Male 65.7
Midbrain
nTPM: 101.5
Samples: 4

Max nTPM: 116.3
Min nTPM: 89.4
Sample A Female 106.1
Sample B Female 94.1
Sample C Male 116.3
Sample D Male 89.4
Periaqueductal gray
nTPM: 85.7
Samples: 3

Max nTPM: 96.8
Min nTPM: 78.9
Sample B Female 81.3
Sample C Male 96.8
Sample D Male 78.9
Superior colliculi
nTPM: 108.1
Samples: 4

Max nTPM: 121.0
Min nTPM: 91.3
Sample A Female 118.7
Sample B Female 101.5
Sample C Male 121.0
Sample D Male 91.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 109.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.8
Samples: 4

Max nTPM: 112.4
Min nTPM: 107.9
Sample A Male 107.9
Sample B Male 112.4
Sample C Female 110.3
Sample D Female 108.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
69816936 Antisense, RP_050510_02_C05, Mouse strain C57BL/6J (56 days, male) 9.1
70795527 Antisense, RP_050712_01_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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