MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA Brain:28.4 nTPM
GTEx:14.7 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:25.2 nTPM
Mouse:2.9 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.4
2828 Female, age 72, unknown 30.4
2666 Male, age 74, left hemisphere 25.0
1870 Female, age 42, unknown 23.1
2586 Male, age 75, left hemisphere 23.1
1833 Male, age 53, unknown 22.2
1830 Male, age 51, unknown 21.0
2411 Female, age 72, unknown 19.6
2019 Male, age 18, unknown 18.0
1827 Male, age 72, unknown 17.7
2219 Male, age 76, both hemispheres 13.5
Dorsal raphe nucleus
nTPM: 22.5
2047 Male, age 72, unknown 26.2
1828 Male, age 53, unknown 23.5
2016 Female, age 72, unknown 23.4
2298 Female, age 72, unknown 20.3
2750 Male, age 76, both hemispheres 18.8
Inferior colliculus
nTPM: 21.5
1890 Male, age 53, unknown 23.1
1848 Female, age 42, unknown 22.7
2849 Male, age 72, unknown 20.9
2097 Female, age 72, unknown 19.3
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Periaquaductal grey, anterior
nTPM: 20.6
1795 Male, age 51, unknown 22.3
1947 Male, age 18, unknown 21.2
2502 Female, age 75, unknown 18.3
Periaquaductal grey, dorsal
nTPM: 20.3
2850 Male, age 76, both hemispheres 23.7
1831 Male, age 72, unknown 20.3
2464 Female, age 72, unknown 19.3
1840 Male, age 53, unknown 18.1
Periaquaductal grey, lateral
nTPM: 23.4
2140 Male, age 76, both hemispheres 25.9
2053 Male, age 18, unknown 23.8
2272 Male, age 74, both hemispheres 20.5
Pretectal area
nTPM: 19.3
1817 Female, age 42, unknown 22.5
2667 Female, age 75, unknown 21.4
2224 Female, age 72, unknown 20.3
2316 Male, age 76, right hemisphere 20.3
1944 Female, age 72, unknown 19.6
2407 Male, age 75, both hemispheres 19.6
2825 Male, age 18, unknown 19.6
2273 Male, age 74, both hemispheres 18.0
2007 Male, age 72, unknown 17.4
1815 Male, age 53, unknown 16.9
1816 Male, age 51, unknown 16.1
Red nucleus
nTPM: 24.1
1954 Female, age 42, unknown 28.4
2588 Male, age 74, left hemisphere 28.3
2769 Male, age 72, unknown 28.1
2227 Male, age 72, unknown 27.2
1821 Female, age 72, unknown 24.6
1904 Male, age 53, unknown 24.4
2725 Female, age 75, unknown 23.4
1865 Male, age 51, unknown 23.3
2503 Female, age 72, unknown 22.0
2823 Male, age 76, right hemisphere 21.2
2584 Male, age 75, left hemisphere 19.2
2785 Male, age 18, unknown 18.8
Substantia nigra
nTPM: 22.2
2699 Male, age 18, unknown 31.1
2665 Male, age 74, both hemispheres 28.5
1916 Female, age 42, unknown 24.3
1851 Male, age 51, unknown 23.5
2590 Female, age 75, unknown 21.4
1889 Female, age 72, unknown 19.5
2583 Male, age 75, right hemisphere 19.4
1941 Male, age 53, unknown 18.5
2409 Female, age 72, unknown 18.3
2241 Male, age 72, unknown 17.5
Superior colliculus
nTPM: 19.7
2664 Male, age 75, both hemispheres 22.5
1796 Male, age 53, unknown 21.7
2087 Female, age 72, unknown 21.6
1913 Female, age 42, unknown 21.3
1839 Male, age 51, unknown 20.3
1995 Male, age 72, unknown 20.3
2668 Female, age 75, unknown 20.3
2587 Male, age 74, left hemisphere 19.0
2261 Male, age 18, unknown 18.7
1895 Male, age 76, right hemisphere 11.5
Ventral tegmental area
nTPM: 21.8
2021 Male, age 53, unknown 23.6
2223 Female, age 72, unknown 23.5
1915 Female, age 42, unknown 22.6
1942 Male, age 51, unknown 21.6
2218 Male, age 76, both hemispheres 21.3
2410 Female, age 72, unknown 18.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 139

Max nTPM: 40.1
Min nTPM: 2.6
Std nTPM: 6.8
Median nTPM: 13.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 40.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 38.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 34.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 28.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 28.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 28.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 28.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 27.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 26.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 26.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 25.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.3
Samples: 4

Max nTPM: 35.8
Min nTPM: 10.5
Sample A Female 20.7
Sample B Female 35.8
Sample C Male 10.5
Sample D Male 18.0
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 30.7
Min nTPM: 8.4
Sample A Female 30.7
Sample B Female 12.9
Sample C Male 12.2
Sample D Male 8.4
Periaqueductal gray
nTPM: 12.1
Samples: 3

Max nTPM: 12.9
Min nTPM: 11.7
Sample B Female 11.7
Sample C Male 12.9
Sample D Male 11.7
Superior colliculi
nTPM: 25.2
Samples: 4

Max nTPM: 45.3
Min nTPM: 12.0
Sample A Female 26.3
Sample B Female 45.3
Sample C Male 12.0
Sample D Male 17.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.6
Sample A Male 3.0
Sample B Male 3.1
Sample C Female 2.8
Sample D Female 2.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
71735070 Antisense, RP_050719_04_F07, Mouse strain C57BL/6J (56 days, male) 21.6
68442853 Antisense, RP_041214_02_G12, Mouse strain C57BL/6J (56 days, male) 1.4
70528635 Antisense, RP_050623_03_A07, Mouse strain C57BL/6J (56 days, male) 0.9

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