MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.0 nTPM
HPA Brain:49.1 nTPM
GTEx:59.0 nTPM
FANTOM5:159.6 Scaled Tags Per Million
Pig:21.4 nTPM
Mouse:15.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.9
2019 Male, age 18, unknown 56.4
1870 Female, age 42, unknown 53.7
1833 Male, age 53, unknown 44.7
1830 Male, age 51, unknown 44.6
2411 Female, age 72, unknown 41.3
2666 Male, age 74, left hemisphere 36.3
2828 Female, age 72, unknown 34.6
1827 Male, age 72, unknown 32.7
2219 Male, age 76, both hemispheres 25.8
2586 Male, age 75, left hemisphere 18.7
Dorsal raphe nucleus
nTPM: 42.8
2750 Male, age 76, both hemispheres 50.5
2298 Female, age 72, unknown 44.1
1828 Male, age 53, unknown 42.0
2016 Female, age 72, unknown 39.9
2047 Male, age 72, unknown 37.3
Inferior colliculus
nTPM: 37.3
2097 Female, age 72, unknown 45.7
1890 Male, age 53, unknown 39.1
1848 Female, age 42, unknown 36.3
2849 Male, age 72, unknown 28.3
Median raphe nucleus
nTPM: 45.2
2220 Male, age 76, midline 45.2
Periaquaductal grey, anterior
nTPM: 37.6
2502 Female, age 75, unknown 46.9
1947 Male, age 18, unknown 35.0
1795 Male, age 51, unknown 31.0
Periaquaductal grey, dorsal
nTPM: 36.0
2850 Male, age 76, both hemispheres 43.5
1831 Male, age 72, unknown 41.5
2464 Female, age 72, unknown 32.2
1840 Male, age 53, unknown 26.8
Periaquaductal grey, lateral
nTPM: 36.8
2140 Male, age 76, both hemispheres 39.0
2272 Male, age 74, both hemispheres 36.8
2053 Male, age 18, unknown 34.5
Pretectal area
nTPM: 37.6
2316 Male, age 76, right hemisphere 44.9
2273 Male, age 74, both hemispheres 43.1
1817 Female, age 42, unknown 42.7
2007 Male, age 72, unknown 39.2
1815 Male, age 53, unknown 38.9
2667 Female, age 75, unknown 37.9
1944 Female, age 72, unknown 35.8
2224 Female, age 72, unknown 34.7
1816 Male, age 51, unknown 33.2
2407 Male, age 75, both hemispheres 32.3
2825 Male, age 18, unknown 31.0
Red nucleus
nTPM: 47.7
1821 Female, age 72, unknown 65.0
1865 Male, age 51, unknown 59.1
1954 Female, age 42, unknown 54.5
1904 Male, age 53, unknown 53.4
2769 Male, age 72, unknown 49.7
2823 Male, age 76, right hemisphere 48.3
2785 Male, age 18, unknown 47.8
2503 Female, age 72, unknown 47.4
2227 Male, age 72, unknown 46.4
2725 Female, age 75, unknown 42.1
2588 Male, age 74, left hemisphere 30.9
2584 Male, age 75, left hemisphere 27.4
Substantia nigra
nTPM: 46.1
2665 Male, age 74, both hemispheres 68.1
2241 Male, age 72, unknown 48.4
2409 Female, age 72, unknown 48.1
1851 Male, age 51, unknown 46.6
1916 Female, age 42, unknown 43.9
1889 Female, age 72, unknown 43.6
2699 Male, age 18, unknown 43.4
1941 Male, age 53, unknown 42.6
2590 Female, age 75, unknown 38.4
2583 Male, age 75, right hemisphere 37.5
Superior colliculus
nTPM: 39.2
1913 Female, age 42, unknown 57.9
2587 Male, age 74, left hemisphere 48.7
1995 Male, age 72, unknown 45.7
2087 Female, age 72, unknown 39.5
2668 Female, age 75, unknown 38.8
1895 Male, age 76, right hemisphere 38.2
1839 Male, age 51, unknown 36.1
2261 Male, age 18, unknown 34.6
1796 Male, age 53, unknown 31.1
2664 Male, age 75, both hemispheres 21.7
Ventral tegmental area
nTPM: 49.1
2223 Female, age 72, unknown 59.5
2021 Male, age 53, unknown 55.4
2218 Male, age 76, both hemispheres 47.7
2410 Female, age 72, unknown 46.8
1942 Male, age 51, unknown 44.0
1915 Female, age 42, unknown 41.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.0
Samples: 139

Max nTPM: 141.3
Min nTPM: 29.3
Std nTPM: 19.9
Median nTPM: 56.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 141.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 126.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 111.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 106.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 102.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 97.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 97.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 97.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 92.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 89.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 88.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 159.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 159.6
FF:10158-103A5 76 years, female 159.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.2
Samples: 4

Max nTPM: 25.3
Min nTPM: 18.2
Sample A Female 20.9
Sample B Female 25.3
Sample C Male 18.2
Sample D Male 20.3
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 32.9
Min nTPM: 13.5
Sample A Female 32.9
Sample B Female 20.1
Sample C Male 15.2
Sample D Male 13.5
Periaqueductal gray
nTPM: 16.7
Samples: 3

Max nTPM: 17.6
Min nTPM: 15.9
Sample B Female 17.6
Sample C Male 16.6
Sample D Male 15.9
Superior colliculi
nTPM: 21.4
Samples: 4

Max nTPM: 28.9
Min nTPM: 17.2
Sample A Female 20.7
Sample B Female 28.9
Sample C Male 18.7
Sample D Male 17.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 16.1
Min nTPM: 14.9
Sample A Male 16.1
Sample B Male 15.5
Sample C Female 14.9
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69735257 Antisense, RP_050503_02_D07, Mouse strain C57BL/6J (56 days, male) 0.6

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