MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.4 nTPM
HPA Brain:98.9 nTPM
GTEx:50.4 nTPM
FANTOM5:152.5 Scaled Tags Per Million
Pig:78.1 nTPM
Mouse:65.3 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.8
2666 Male, age 74, left hemisphere 106.0
2019 Male, age 18, unknown 98.6
2586 Male, age 75, left hemisphere 89.8
1830 Male, age 51, unknown 88.5
1833 Male, age 53, unknown 88.0
2411 Female, age 72, unknown 87.9
1827 Male, age 72, unknown 87.7
1870 Female, age 42, unknown 86.6
2219 Male, age 76, both hemispheres 85.9
2828 Female, age 72, unknown 79.2
Dorsal raphe nucleus
nTPM: 79.5
2016 Female, age 72, unknown 83.1
2750 Male, age 76, both hemispheres 82.3
1828 Male, age 53, unknown 82.0
2047 Male, age 72, unknown 80.5
2298 Female, age 72, unknown 69.4
Inferior colliculus
nTPM: 82.3
1890 Male, age 53, unknown 87.2
2849 Male, age 72, unknown 84.7
2097 Female, age 72, unknown 79.0
1848 Female, age 42, unknown 78.4
Median raphe nucleus
nTPM: 90.3
2220 Male, age 76, midline 90.3
Periaquaductal grey, anterior
nTPM: 77.8
1947 Male, age 18, unknown 81.7
2502 Female, age 75, unknown 81.2
1795 Male, age 51, unknown 70.5
Periaquaductal grey, dorsal
nTPM: 78.1
1831 Male, age 72, unknown 80.5
2850 Male, age 76, both hemispheres 78.2
1840 Male, age 53, unknown 77.1
2464 Female, age 72, unknown 76.8
Periaquaductal grey, lateral
nTPM: 73.4
2053 Male, age 18, unknown 81.1
2140 Male, age 76, both hemispheres 73.1
2272 Male, age 74, both hemispheres 66.1
Pretectal area
nTPM: 84.2
2007 Male, age 72, unknown 95.0
1944 Female, age 72, unknown 94.2
1815 Male, age 53, unknown 94.0
1816 Male, age 51, unknown 91.3
2407 Male, age 75, both hemispheres 88.8
1817 Female, age 42, unknown 87.3
2316 Male, age 76, right hemisphere 78.3
2224 Female, age 72, unknown 76.2
2825 Male, age 18, unknown 75.6
2273 Male, age 74, both hemispheres 75.5
2667 Female, age 75, unknown 70.6
Red nucleus
nTPM: 98.9
2503 Female, age 72, unknown 108.3
2725 Female, age 75, unknown 104.3
2823 Male, age 76, right hemisphere 103.5
1904 Male, age 53, unknown 103.1
1821 Female, age 72, unknown 102.8
1865 Male, age 51, unknown 102.3
2588 Male, age 74, left hemisphere 102.3
1954 Female, age 42, unknown 97.8
2769 Male, age 72, unknown 93.4
2227 Male, age 72, unknown 90.1
2785 Male, age 18, unknown 89.5
2584 Male, age 75, left hemisphere 89.4
Substantia nigra
nTPM: 98.9
1916 Female, age 42, unknown 108.2
2241 Male, age 72, unknown 104.4
1851 Male, age 51, unknown 102.9
2699 Male, age 18, unknown 102.6
2409 Female, age 72, unknown 98.7
1941 Male, age 53, unknown 97.4
2583 Male, age 75, right hemisphere 96.5
2665 Male, age 74, both hemispheres 94.9
2590 Female, age 75, unknown 93.7
1889 Female, age 72, unknown 89.5
Superior colliculus
nTPM: 85.9
2668 Female, age 75, unknown 96.9
2587 Male, age 74, left hemisphere 95.4
1895 Male, age 76, right hemisphere 92.1
1913 Female, age 42, unknown 89.9
2664 Male, age 75, both hemispheres 84.3
2087 Female, age 72, unknown 83.7
1796 Male, age 53, unknown 79.8
1839 Male, age 51, unknown 79.8
2261 Male, age 18, unknown 78.5
1995 Male, age 72, unknown 78.4
Ventral tegmental area
nTPM: 90.4
2223 Female, age 72, unknown 99.1
1915 Female, age 42, unknown 93.1
1942 Male, age 51, unknown 91.6
2218 Male, age 76, both hemispheres 91.3
2410 Female, age 72, unknown 88.4
2021 Male, age 53, unknown 78.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.4
Samples: 139

Max nTPM: 108.3
Min nTPM: 26.5
Std nTPM: 14.6
Median nTPM: 45.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 108.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 96.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 94.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 92.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 88.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 82.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 79.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 76.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 76.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 74.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 73.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 152.5
FF:10158-103A5 76 years, female 152.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 78.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.7
Samples: 4

Max nTPM: 81.3
Min nTPM: 62.5
Sample A Female 78.3
Sample B Female 62.5
Sample C Male 81.3
Sample D Male 72.6
Midbrain
nTPM: 78.1
Samples: 4

Max nTPM: 85.5
Min nTPM: 71.4
Sample A Female 85.5
Sample B Female 72.9
Sample C Male 82.6
Sample D Male 71.4
Periaqueductal gray
nTPM: 70.1
Samples: 3

Max nTPM: 77.1
Min nTPM: 66.3
Sample B Female 66.3
Sample C Male 77.1
Sample D Male 66.8
Superior colliculi
nTPM: 71.5
Samples: 4

Max nTPM: 84.2
Min nTPM: 52.6
Sample A Female 72.3
Sample B Female 52.6
Sample C Male 84.2
Sample D Male 77.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 65.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.3
Samples: 4

Max nTPM: 67.9
Min nTPM: 61.0
Sample A Male 61.0
Sample B Male 67.9
Sample C Female 67.2
Sample D Female 65.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
71920504 Antisense, RP_050915_02_C01, Mouse strain C57BL/6J (56 days, male) 1.1
70812877 Antisense, RP_050712_02_G09, Mouse strain C57BL/6J (56 days, male) 0.9

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