MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.2 nTPM
HPA Brain:19.2 nTPM
GTEx:11.2 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:7.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.2
2586 Male, age 75, left hemisphere 33.6
2019 Male, age 18, unknown 23.0
2666 Male, age 74, left hemisphere 19.9
1827 Male, age 72, unknown 19.0
1870 Female, age 42, unknown 18.4
2828 Female, age 72, unknown 18.2
1830 Male, age 51, unknown 16.2
1833 Male, age 53, unknown 15.7
2411 Female, age 72, unknown 15.1
2219 Male, age 76, both hemispheres 13.2
Dorsal raphe nucleus
nTPM: 17.0
1828 Male, age 53, unknown 19.4
2298 Female, age 72, unknown 18.8
2047 Male, age 72, unknown 17.5
2016 Female, age 72, unknown 15.6
2750 Male, age 76, both hemispheres 13.9
Inferior colliculus
nTPM: 17.7
2849 Male, age 72, unknown 20.6
2097 Female, age 72, unknown 17.6
1890 Male, age 53, unknown 17.3
1848 Female, age 42, unknown 15.3
Median raphe nucleus
nTPM: 15.8
2220 Male, age 76, midline 15.8
Periaquaductal grey, anterior
nTPM: 16.5
1947 Male, age 18, unknown 18.0
1795 Male, age 51, unknown 16.1
2502 Female, age 75, unknown 15.4
Periaquaductal grey, dorsal
nTPM: 16.6
2850 Male, age 76, both hemispheres 18.3
1840 Male, age 53, unknown 16.7
2464 Female, age 72, unknown 16.7
1831 Male, age 72, unknown 14.6
Periaquaductal grey, lateral
nTPM: 15.2
2140 Male, age 76, both hemispheres 17.5
2272 Male, age 74, both hemispheres 16.0
2053 Male, age 18, unknown 12.0
Pretectal area
nTPM: 16.0
2007 Male, age 72, unknown 20.5
1817 Female, age 42, unknown 20.2
1816 Male, age 51, unknown 17.5
1944 Female, age 72, unknown 17.5
2825 Male, age 18, unknown 16.6
2407 Male, age 75, both hemispheres 15.2
1815 Male, age 53, unknown 15.0
2224 Female, age 72, unknown 14.0
2273 Male, age 74, both hemispheres 13.6
2316 Male, age 76, right hemisphere 13.3
2667 Female, age 75, unknown 12.7
Red nucleus
nTPM: 17.5
2584 Male, age 75, left hemisphere 24.2
2785 Male, age 18, unknown 21.5
2588 Male, age 74, left hemisphere 19.2
2725 Female, age 75, unknown 18.2
1865 Male, age 51, unknown 17.3
2227 Male, age 72, unknown 16.8
1954 Female, age 42, unknown 16.6
2823 Male, age 76, right hemisphere 16.3
2769 Male, age 72, unknown 15.7
2503 Female, age 72, unknown 15.4
1821 Female, age 72, unknown 14.6
1904 Male, age 53, unknown 14.1
Substantia nigra
nTPM: 18.3
1916 Female, age 42, unknown 25.6
2665 Male, age 74, both hemispheres 21.1
2583 Male, age 75, right hemisphere 20.2
1941 Male, age 53, unknown 19.8
2409 Female, age 72, unknown 19.0
1851 Male, age 51, unknown 17.9
2590 Female, age 75, unknown 16.3
2241 Male, age 72, unknown 15.7
1889 Female, age 72, unknown 14.6
2699 Male, age 18, unknown 12.8
Superior colliculus
nTPM: 15.6
2668 Female, age 75, unknown 21.3
1796 Male, age 53, unknown 19.2
2087 Female, age 72, unknown 16.8
2664 Male, age 75, both hemispheres 16.1
2261 Male, age 18, unknown 15.1
1839 Male, age 51, unknown 14.8
1895 Male, age 76, right hemisphere 14.1
1995 Male, age 72, unknown 14.1
2587 Male, age 74, left hemisphere 12.5
1913 Female, age 42, unknown 11.7
Ventral tegmental area
nTPM: 15.6
1915 Female, age 42, unknown 17.4
1942 Male, age 51, unknown 17.3
2410 Female, age 72, unknown 16.6
2021 Male, age 53, unknown 15.2
2223 Female, age 72, unknown 14.0
2218 Male, age 76, both hemispheres 13.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.2
Samples: 139

Max nTPM: 43.6
Min nTPM: 4.3
Std nTPM: 6.0
Median nTPM: 9.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 43.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 35.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 33.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 32.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 25.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 24.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 24.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 24.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 22.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 20.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 19.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 22.0
Min nTPM: 14.5
Sample A Female 22.0
Sample B Female 17.5
Sample C Male 20.0
Sample D Male 14.5
Midbrain
nTPM: 16.4
Samples: 4

Max nTPM: 19.4
Min nTPM: 14.3
Sample A Female 19.4
Sample B Female 14.3
Sample C Male 17.2
Sample D Male 14.7
Periaqueductal gray
nTPM: 14.8
Samples: 3

Max nTPM: 17.1
Min nTPM: 13.4
Sample B Female 14.0
Sample C Male 17.1
Sample D Male 13.4
Superior colliculi
nTPM: 18.7
Samples: 4

Max nTPM: 20.7
Min nTPM: 16.9
Sample A Female 20.7
Sample B Female 20.3
Sample C Male 16.9
Sample D Male 16.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.6
Sample A Male 7.4
Sample B Male 7.7
Sample C Female 6.6
Sample D Female 7.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
79536697 Antisense, RP_071018_01_B04, Mouse strain C57BL/6J (56 days, male) 0.2

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