MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.9 nTPM
HPA Brain:18.4 nTPM
GTEx:13.9 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:3.4 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.0
2586 Male, age 75, left hemisphere 15.9
2828 Female, age 72, unknown 15.7
1833 Male, age 53, unknown 15.6
2666 Male, age 74, left hemisphere 15.3
1870 Female, age 42, unknown 14.3
1830 Male, age 51, unknown 14.2
1827 Male, age 72, unknown 13.2
2219 Male, age 76, both hemispheres 12.9
2411 Female, age 72, unknown 11.9
2019 Male, age 18, unknown 11.4
Dorsal raphe nucleus
nTPM: 17.4
2047 Male, age 72, unknown 21.8
2016 Female, age 72, unknown 17.6
2298 Female, age 72, unknown 17.5
1828 Male, age 53, unknown 16.7
2750 Male, age 76, both hemispheres 13.2
Inferior colliculus
nTPM: 18.4
2849 Male, age 72, unknown 19.4
1848 Female, age 42, unknown 18.4
1890 Male, age 53, unknown 17.9
2097 Female, age 72, unknown 17.7
Median raphe nucleus
nTPM: 17.1
2220 Male, age 76, midline 17.1
Periaquaductal grey, anterior
nTPM: 16.1
1947 Male, age 18, unknown 18.5
2502 Female, age 75, unknown 15.9
1795 Male, age 51, unknown 13.8
Periaquaductal grey, dorsal
nTPM: 15.6
1840 Male, age 53, unknown 18.1
2850 Male, age 76, both hemispheres 17.0
2464 Female, age 72, unknown 14.2
1831 Male, age 72, unknown 13.1
Periaquaductal grey, lateral
nTPM: 14.5
2140 Male, age 76, both hemispheres 15.6
2272 Male, age 74, both hemispheres 14.9
2053 Male, age 18, unknown 13.1
Pretectal area
nTPM: 13.3
2825 Male, age 18, unknown 16.8
2667 Female, age 75, unknown 15.1
2224 Female, age 72, unknown 14.7
1817 Female, age 42, unknown 14.1
2273 Male, age 74, both hemispheres 13.2
1944 Female, age 72, unknown 13.1
2316 Male, age 76, right hemisphere 13.0
1816 Male, age 51, unknown 12.9
1815 Male, age 53, unknown 11.7
2007 Male, age 72, unknown 11.2
2407 Male, age 75, both hemispheres 10.4
Red nucleus
nTPM: 15.4
1954 Female, age 42, unknown 17.3
2588 Male, age 74, left hemisphere 17.0
2769 Male, age 72, unknown 16.6
2227 Male, age 72, unknown 16.0
2503 Female, age 72, unknown 15.8
1865 Male, age 51, unknown 15.6
1821 Female, age 72, unknown 15.3
1904 Male, age 53, unknown 15.0
2725 Female, age 75, unknown 14.9
2823 Male, age 76, right hemisphere 14.2
2584 Male, age 75, left hemisphere 14.1
2785 Male, age 18, unknown 13.1
Substantia nigra
nTPM: 15.5
2699 Male, age 18, unknown 19.3
1916 Female, age 42, unknown 18.0
2409 Female, age 72, unknown 16.5
2665 Male, age 74, both hemispheres 16.5
1851 Male, age 51, unknown 16.3
2241 Male, age 72, unknown 15.5
1889 Female, age 72, unknown 14.0
2590 Female, age 75, unknown 13.9
2583 Male, age 75, right hemisphere 13.6
1941 Male, age 53, unknown 11.5
Superior colliculus
nTPM: 13.1
1796 Male, age 53, unknown 14.6
1839 Male, age 51, unknown 14.3
1895 Male, age 76, right hemisphere 14.3
2664 Male, age 75, both hemispheres 13.8
2587 Male, age 74, left hemisphere 13.4
2668 Female, age 75, unknown 13.1
1995 Male, age 72, unknown 12.5
2087 Female, age 72, unknown 12.1
1913 Female, age 42, unknown 11.7
2261 Male, age 18, unknown 11.0
Ventral tegmental area
nTPM: 15.8
1915 Female, age 42, unknown 18.0
2021 Male, age 53, unknown 17.5
2410 Female, age 72, unknown 15.9
1942 Male, age 51, unknown 15.5
2223 Female, age 72, unknown 14.4
2218 Male, age 76, both hemispheres 13.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.9
Samples: 139

Max nTPM: 26.9
Min nTPM: 4.7
Std nTPM: 3.4
Median nTPM: 13.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 26.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 25.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 22.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 21.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 21.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 20.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 20.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 19.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 19.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 18.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 18.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.4
Samples: 4

Max nTPM: 18.8
Min nTPM: 17.7
Sample A Female 17.7
Sample B Female 18.8
Sample C Male 18.4
Sample D Male 18.7
Midbrain
nTPM: 16.4
Samples: 4

Max nTPM: 29.9
Min nTPM: 9.9
Sample A Female 29.9
Sample B Female 13.4
Sample C Male 12.4
Sample D Male 9.9
Periaqueductal gray
nTPM: 12.6
Samples: 3

Max nTPM: 14.0
Min nTPM: 11.4
Sample B Female 11.4
Sample C Male 14.0
Sample D Male 12.5
Superior colliculi
nTPM: 16.2
Samples: 4

Max nTPM: 23.0
Min nTPM: 13.9
Sample A Female 14.0
Sample B Female 23.0
Sample C Male 14.0
Sample D Male 13.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.8
Sample A Male 3.8
Sample B Male 3.5
Sample C Female 2.8
Sample D Female 3.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
75694429 Antisense, RP_060518_03_G05, Mouse strain C57BL/6J (56 days, male) 0.6

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