MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.9 nTPM
HPA Brain:14.0 nTPM
GTEx:3.9 nTPM
FANTOM5:7.3 Scaled Tags Per Million
Pig:4.6 nTPM
Mouse:10.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.2
1833 Male, age 53, unknown 16.1
2411 Female, age 72, unknown 14.7
2219 Male, age 76, both hemispheres 14.5
1870 Female, age 42, unknown 14.4
1830 Male, age 51, unknown 14.2
1827 Male, age 72, unknown 13.0
2019 Male, age 18, unknown 12.8
2666 Male, age 74, left hemisphere 11.6
2828 Female, age 72, unknown 11.1
2586 Male, age 75, left hemisphere 9.4
Dorsal raphe nucleus
nTPM: 12.0
2298 Female, age 72, unknown 12.3
1828 Male, age 53, unknown 12.1
2047 Male, age 72, unknown 12.0
2016 Female, age 72, unknown 11.8
2750 Male, age 76, both hemispheres 11.7
Inferior colliculus
nTPM: 13.7
2849 Male, age 72, unknown 15.5
2097 Female, age 72, unknown 13.6
1848 Female, age 42, unknown 13.1
1890 Male, age 53, unknown 12.8
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Periaquaductal grey, anterior
nTPM: 12.7
1947 Male, age 18, unknown 14.1
1795 Male, age 51, unknown 12.3
2502 Female, age 75, unknown 11.6
Periaquaductal grey, dorsal
nTPM: 12.7
2464 Female, age 72, unknown 15.2
2850 Male, age 76, both hemispheres 12.3
1840 Male, age 53, unknown 12.1
1831 Male, age 72, unknown 11.1
Periaquaductal grey, lateral
nTPM: 14.0
2272 Male, age 74, both hemispheres 16.2
2053 Male, age 18, unknown 13.7
2140 Male, age 76, both hemispheres 12.0
Pretectal area
nTPM: 12.8
2407 Male, age 75, both hemispheres 15.5
2273 Male, age 74, both hemispheres 14.1
2224 Female, age 72, unknown 14.0
2316 Male, age 76, right hemisphere 13.1
2667 Female, age 75, unknown 13.0
2825 Male, age 18, unknown 12.9
1815 Male, age 53, unknown 12.6
1817 Female, age 42, unknown 11.9
1816 Male, age 51, unknown 11.8
2007 Male, age 72, unknown 11.5
1944 Female, age 72, unknown 10.0
Red nucleus
nTPM: 13.9
2725 Female, age 75, unknown 14.9
1904 Male, age 53, unknown 14.8
2769 Male, age 72, unknown 14.7
1865 Male, age 51, unknown 14.6
2588 Male, age 74, left hemisphere 14.5
2227 Male, age 72, unknown 14.0
1954 Female, age 42, unknown 13.8
2785 Male, age 18, unknown 13.7
2503 Female, age 72, unknown 13.6
2584 Male, age 75, left hemisphere 13.4
2823 Male, age 76, right hemisphere 13.0
1821 Female, age 72, unknown 12.1
Substantia nigra
nTPM: 12.3
2590 Female, age 75, unknown 16.1
2583 Male, age 75, right hemisphere 14.6
2241 Male, age 72, unknown 12.6
2699 Male, age 18, unknown 12.2
1889 Female, age 72, unknown 12.1
1851 Male, age 51, unknown 11.9
1916 Female, age 42, unknown 11.9
2665 Male, age 74, both hemispheres 11.3
1941 Male, age 53, unknown 10.5
2409 Female, age 72, unknown 9.5
Superior colliculus
nTPM: 12.5
2587 Male, age 74, left hemisphere 15.8
2664 Male, age 75, both hemispheres 13.7
1895 Male, age 76, right hemisphere 13.6
1839 Male, age 51, unknown 13.5
1796 Male, age 53, unknown 12.6
1995 Male, age 72, unknown 12.4
2087 Female, age 72, unknown 11.8
2261 Male, age 18, unknown 11.3
1913 Female, age 42, unknown 10.6
2668 Female, age 75, unknown 9.2
Ventral tegmental area
nTPM: 12.2
2223 Female, age 72, unknown 13.0
2410 Female, age 72, unknown 12.8
1915 Female, age 42, unknown 12.3
2218 Male, age 76, both hemispheres 12.3
2021 Male, age 53, unknown 11.8
1942 Male, age 51, unknown 11.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.9
Samples: 139

Max nTPM: 10.0
Min nTPM: 2.0
Std nTPM: 1.2
Median nTPM: 3.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 10.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 7.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 7.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 7.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 6.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 6.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 6.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 6.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 6.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 5.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 5.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.3
FF:10158-103A5 76 years, female 7.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.7
Samples: 4

Max nTPM: 5.4
Min nTPM: 2.8
Sample A Female 3.1
Sample B Female 2.8
Sample C Male 3.3
Sample D Male 5.4
Midbrain
nTPM: 3.6
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.9
Sample A Female 4.0
Sample B Female 3.2
Sample C Male 2.9
Sample D Male 4.3
Periaqueductal gray
nTPM: 4.7
Samples: 3

Max nTPM: 6.2
Min nTPM: 2.6
Sample B Female 2.6
Sample C Male 5.2
Sample D Male 6.2
Superior colliculi
nTPM: 3.6
Samples: 4

Max nTPM: 5.0
Min nTPM: 2.8
Sample A Female 3.3
Sample B Female 2.8
Sample C Male 3.1
Sample D Male 5.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 11.5
Min nTPM: 10.3
Sample A Male 10.8
Sample B Male 11.5
Sample C Female 10.9
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
641538 Antisense, RP_040914_01_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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