MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.1 nTPM
HPA Brain:39.5 nTPM
GTEx:9.1 nTPM
FANTOM5:46.6 Scaled Tags Per Million
Pig:37.8 nTPM
Mouse:88.4 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.1
2019 Male, age 18, unknown 40.5
2586 Male, age 75, left hemisphere 39.9
2666 Male, age 74, left hemisphere 38.9
1827 Male, age 72, unknown 37.8
2219 Male, age 76, both hemispheres 36.8
1833 Male, age 53, unknown 35.0
2828 Female, age 72, unknown 32.5
2411 Female, age 72, unknown 30.9
1830 Male, age 51, unknown 30.7
1870 Female, age 42, unknown 27.6
Dorsal raphe nucleus
nTPM: 32.2
2047 Male, age 72, unknown 35.3
2298 Female, age 72, unknown 34.2
1828 Male, age 53, unknown 32.1
2750 Male, age 76, both hemispheres 31.8
2016 Female, age 72, unknown 27.8
Inferior colliculus
nTPM: 37.0
2849 Male, age 72, unknown 41.4
1848 Female, age 42, unknown 39.6
2097 Female, age 72, unknown 33.7
1890 Male, age 53, unknown 33.1
Median raphe nucleus
nTPM: 37.1
2220 Male, age 76, midline 37.1
Periaquaductal grey, anterior
nTPM: 36.5
2502 Female, age 75, unknown 40.3
1795 Male, age 51, unknown 35.2
1947 Male, age 18, unknown 34.0
Periaquaductal grey, dorsal
nTPM: 31.5
1840 Male, age 53, unknown 33.5
2464 Female, age 72, unknown 32.9
2850 Male, age 76, both hemispheres 31.8
1831 Male, age 72, unknown 27.9
Periaquaductal grey, lateral
nTPM: 32.0
2140 Male, age 76, both hemispheres 36.7
2272 Male, age 74, both hemispheres 30.0
2053 Male, age 18, unknown 29.2
Pretectal area
nTPM: 39.5
2007 Male, age 72, unknown 50.0
1816 Male, age 51, unknown 49.6
1817 Female, age 42, unknown 49.4
1944 Female, age 72, unknown 44.4
1815 Male, age 53, unknown 41.2
2316 Male, age 76, right hemisphere 36.1
2667 Female, age 75, unknown 35.5
2407 Male, age 75, both hemispheres 33.5
2224 Female, age 72, unknown 33.2
2825 Male, age 18, unknown 31.6
2273 Male, age 74, both hemispheres 29.6
Red nucleus
nTPM: 31.3
2785 Male, age 18, unknown 38.9
2584 Male, age 75, left hemisphere 37.7
2725 Female, age 75, unknown 32.8
2227 Male, age 72, unknown 32.3
2503 Female, age 72, unknown 32.0
2823 Male, age 76, right hemisphere 31.9
2588 Male, age 74, left hemisphere 30.1
1865 Male, age 51, unknown 28.5
2769 Male, age 72, unknown 28.3
1954 Female, age 42, unknown 27.9
1821 Female, age 72, unknown 27.7
1904 Male, age 53, unknown 27.5
Substantia nigra
nTPM: 36.5
1916 Female, age 42, unknown 44.6
1889 Female, age 72, unknown 40.7
1941 Male, age 53, unknown 40.4
2665 Male, age 74, both hemispheres 38.3
1851 Male, age 51, unknown 38.1
2409 Female, age 72, unknown 34.5
2241 Male, age 72, unknown 34.2
2583 Male, age 75, right hemisphere 33.8
2699 Male, age 18, unknown 32.3
2590 Female, age 75, unknown 28.2
Superior colliculus
nTPM: 36.5
2668 Female, age 75, unknown 43.3
1796 Male, age 53, unknown 42.7
2087 Female, age 72, unknown 41.1
2261 Male, age 18, unknown 39.7
1839 Male, age 51, unknown 37.8
1895 Male, age 76, right hemisphere 36.6
2664 Male, age 75, both hemispheres 34.8
2587 Male, age 74, left hemisphere 34.3
1913 Female, age 42, unknown 28.1
1995 Male, age 72, unknown 26.2
Ventral tegmental area
nTPM: 33.9
2218 Male, age 76, both hemispheres 38.5
2223 Female, age 72, unknown 36.1
2410 Female, age 72, unknown 35.4
1915 Female, age 42, unknown 34.6
1942 Male, age 51, unknown 30.4
2021 Male, age 53, unknown 28.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.1
Samples: 139

Max nTPM: 18.4
Min nTPM: 3.7
Std nTPM: 2.7
Median nTPM: 8.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 18.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 16.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 15.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 15.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 14.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 14.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 14.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 13.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 13.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.6
FF:10158-103A5 76 years, female 46.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.9
Samples: 4

Max nTPM: 34.8
Min nTPM: 16.4
Sample A Female 34.8
Sample B Female 22.0
Sample C Male 34.5
Sample D Male 16.4
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 52.8
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 29.0
Sample C Male 52.8
Sample D Male 44.4
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 34.4
Min nTPM: 26.6
Sample B Female 29.9
Sample C Male 34.4
Sample D Male 26.6
Superior colliculi
nTPM: 37.8
Samples: 4

Max nTPM: 47.2
Min nTPM: 25.0
Sample A Female 41.6
Sample B Female 25.0
Sample C Male 47.2
Sample D Male 37.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.4
Samples: 4

Max nTPM: 96.8
Min nTPM: 78.2
Sample A Male 78.2
Sample B Male 87.8
Sample C Female 96.8
Sample D Female 90.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
70195000 Antisense, RP_050517_02_B09, Mouse strain C57BL/6J (56 days, male) 2.5

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