MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:570.6 nTPM
HPA Brain:718.6 nTPM
GTEx:570.6 nTPM
FANTOM5:575.4 Scaled Tags Per Million
Pig:273.5 nTPM
Mouse:372.3 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 718.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 679.9
2666 Male, age 74, left hemisphere 904.8
2586 Male, age 75, left hemisphere 895.7
2019 Male, age 18, unknown 854.7
2828 Female, age 72, unknown 691.4
1827 Male, age 72, unknown 655.7
1833 Male, age 53, unknown 608.6
1830 Male, age 51, unknown 595.6
2411 Female, age 72, unknown 589.4
1870 Female, age 42, unknown 543.2
2219 Male, age 76, both hemispheres 460.2
Dorsal raphe nucleus
nTPM: 523.8
2750 Male, age 76, both hemispheres 619.8
1828 Male, age 53, unknown 544.7
2016 Female, age 72, unknown 519.6
2047 Male, age 72, unknown 489.8
2298 Female, age 72, unknown 445.1
Inferior colliculus
nTPM: 465.5
1890 Male, age 53, unknown 518.4
1848 Female, age 42, unknown 473.4
2849 Male, age 72, unknown 465.8
2097 Female, age 72, unknown 404.6
Median raphe nucleus
nTPM: 566.1
2220 Male, age 76, midline 566.1
Periaquaductal grey, anterior
nTPM: 557.1
2502 Female, age 75, unknown 616.1
1795 Male, age 51, unknown 547.8
1947 Male, age 18, unknown 507.4
Periaquaductal grey, dorsal
nTPM: 487.2
2850 Male, age 76, both hemispheres 540.6
1831 Male, age 72, unknown 512.8
2464 Female, age 72, unknown 499.2
1840 Male, age 53, unknown 396.1
Periaquaductal grey, lateral
nTPM: 477.4
2140 Male, age 76, both hemispheres 499.3
2053 Male, age 18, unknown 483.7
2272 Male, age 74, both hemispheres 449.2
Pretectal area
nTPM: 637.7
2007 Male, age 72, unknown 886.2
1816 Male, age 51, unknown 858.5
1815 Male, age 53, unknown 855.7
1817 Female, age 42, unknown 783.1
1944 Female, age 72, unknown 774.2
2407 Male, age 75, both hemispheres 577.5
2316 Male, age 76, right hemisphere 495.8
2825 Male, age 18, unknown 475.6
2667 Female, age 75, unknown 467.9
2224 Female, age 72, unknown 427.1
2273 Male, age 74, both hemispheres 412.8
Red nucleus
nTPM: 718.6
2588 Male, age 74, left hemisphere 998.0
2785 Male, age 18, unknown 836.8
2503 Female, age 72, unknown 795.9
2584 Male, age 75, left hemisphere 752.1
1865 Male, age 51, unknown 712.2
1904 Male, age 53, unknown 707.5
2725 Female, age 75, unknown 697.4
1821 Female, age 72, unknown 665.6
2823 Male, age 76, right hemisphere 626.1
1954 Female, age 42, unknown 613.8
2769 Male, age 72, unknown 610.7
2227 Male, age 72, unknown 607.4
Substantia nigra
nTPM: 637.2
2665 Male, age 74, both hemispheres 762.9
1889 Female, age 72, unknown 699.7
2583 Male, age 75, right hemisphere 671.8
1916 Female, age 42, unknown 667.6
2590 Female, age 75, unknown 655.0
1851 Male, age 51, unknown 640.7
2241 Male, age 72, unknown 589.1
1941 Male, age 53, unknown 578.4
2699 Male, age 18, unknown 559.8
2409 Female, age 72, unknown 547.2
Superior colliculus
nTPM: 627.5
2668 Female, age 75, unknown 723.4
2664 Male, age 75, both hemispheres 693.0
2587 Male, age 74, left hemisphere 681.2
2087 Female, age 72, unknown 670.2
2261 Male, age 18, unknown 645.9
1995 Male, age 72, unknown 637.3
1913 Female, age 42, unknown 618.5
1796 Male, age 53, unknown 595.0
1839 Male, age 51, unknown 548.9
1895 Male, age 76, right hemisphere 461.7
Ventral tegmental area
nTPM: 561.2
2410 Female, age 72, unknown 627.8
2223 Female, age 72, unknown 593.8
2218 Male, age 76, both hemispheres 577.9
1915 Female, age 42, unknown 537.6
2021 Male, age 53, unknown 525.3
1942 Male, age 51, unknown 504.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 570.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 570.6
Samples: 139

Max nTPM: 1335.8
Min nTPM: 227.5
Std nTPM: 246.5
Median nTPM: 497.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1335.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1264.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1226.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1186.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1147.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1134.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1127.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1106.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1091.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 1068.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1023.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 575.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 575.4
FF:10158-103A5 76 years, female 575.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 273.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 169.0
Samples: 4

Max nTPM: 190.0
Min nTPM: 154.1
Sample A Female 172.9
Sample B Female 154.1
Sample C Male 158.8
Sample D Male 190.0
Midbrain
nTPM: 273.6
Samples: 4

Max nTPM: 469.2
Min nTPM: 140.6
Sample A Female 308.5
Sample B Female 140.6
Sample C Male 469.2
Sample D Male 175.9
Periaqueductal gray
nTPM: 134.6
Samples: 3

Max nTPM: 140.7
Min nTPM: 128.5
Sample B Female 134.6
Sample C Male 140.7
Sample D Male 128.5
Superior colliculi
nTPM: 254.2
Samples: 4

Max nTPM: 375.9
Min nTPM: 183.7
Sample A Female 214.4
Sample B Female 183.7
Sample C Male 375.9
Sample D Male 242.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 372.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 372.3
Samples: 4

Max nTPM: 377.5
Min nTPM: 368.8
Sample A Male 372.3
Sample B Male 377.5
Sample C Female 370.6
Sample D Female 368.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
68845598 Antisense, RP_050224_02_B05, Mouse strain C57BL/6J (56 days, male) 6.5
71587919 Antisense, RP_050725_03_G05, Mouse strain C57BL/6J (56 days, male) 6.5

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